Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1161 138 7e-28 >seq1161 Length=5408 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||| ||| |||||||| || |||||||| ||| Sbjct 3935 CCACCCCGAAGACGGAGGACAAGGTGGAGTGTGGATTCCTTTTGGATATTATAATCCGAA 3994 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || ||||||||||| ||||| || || | || || ||||| || || Sbjct 3995 AGTGTCCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGGTCTGGTGGG 4054 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| |||||||| || ||| || ||| |||||| || Sbjct 4055 ATACCCTCTTTGTCTTGGAT-TTTGCTTTTAACGTTATCAATGGTATCTGAGCTCTCGAC 4113 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || ||||| ||||| | || || || || |||||||| Sbjct 4114 TTCCAGGGTGATAGTTTTGCCGGTCAGTGTCTTAACGAAGATCTGCAT 4161 Score = 136 bits (150), Expect = 2e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||| ||||||||||||||||||||||| ||||| || || || ||||| || | || Sbjct 3721 CAACACTAAATGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCGACCATC 3780 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| || || ||||| ||||| || | ||||| ||||| || || | || ||||| || Sbjct 3781 TTCCAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCTTCCTTATC 3840 Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 ||| ||| | || ||| | ||| || || |||||| ||||| | || || | Sbjct 3841 -CTGAATTTTACTCTTTACGTTGTCAATAGTATCGGAGCTCTCAACTTCGAGTGTGATGG 3899 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| | |||||||| ||||||||||| Sbjct 3900 TTTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 3933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714763253244