Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastomyces_20percursus_20[genbank_20GCA_5F001883805.1_202016-11-18] 3,868 sequences; 32,310,953 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1161 183 7e-41 seq849 111 4e-19 seq602 96.9 8e-15 >seq1161 Length=5408 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| |||||||| || || || |||||||| Sbjct 4158 CAGATCTTCGTTAAGACACTGACCGGCAAAACTATCACCCTGGAAGTCGAGAGCTCAGAT 4099 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| || || || |||||||| || ||||| || ||||||||| Sbjct 4098 ACCATTGATAACGTTAAAAGCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAGCAA 4039 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||||||||| || || ||||| |||| ||| | |||||||| || Sbjct 4038 CGACTCATCTTCGCCGGAAAACAACTTGAGGATGGCCGGACACTTTCGGATTATAATATC 3979 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| ||||| || ||||| Sbjct 3978 CAAAAGGAATCCACACTCCACCTTGT 3953 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || ||||| ||||| ||||| || || ||||| || Sbjct 3930 CAGATTTTCGTGAAAACCCTGACCGGCAAAACCATCACACTCGAAGTTGAGAGCTCCGAT 3871 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || |||||||| || ||||| || || || |||||||| Sbjct 3870 ACTATTGACAACGTAAAGAGTAAAATTCAGGATAAGGAAGGGATTCCCCCAGACCAGCAG 3811 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| |||| || |||| || ||| || Sbjct 3810 CGCCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGGACACTCTCCGACTACAACATC 3751 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||| || || || ||| | || ||||| Sbjct 3750 CAAAAGGAGAGCACTCTCCATTTAGTGTTGAG 3719 Score = 111 bits (122), Expect = 4e-19 Identities = 141/191 (74%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAA--AGCTCAGACACCATCGAGAACGTCAA 178000 |||| || || || ||||| |||||||| || || | || || ||||| || || Sbjct 4675 TCACCGGCAAGACCATCACTCTCGAGGTTGAGTCAGGT--GATACTATCGACGCGGTTAA 4618 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||| || Sbjct 4617 GTCTAAGATTCAAGACAAGGAAGGCATCCCTCCCGACCAGCAACGTCTTATTTTCGCTGG 4558 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||| ||||| ||||| || | |||||| | ||||| || | || || || || || || Sbjct 4557 AAAGCAGCTGGAAGACGGCCGTACTCTTTCTGATTACAATATTCAGAAGGAGTCTACTCT 4498 Query 178121 GCATCTTGTTT 178131 || |||| || Sbjct 4497 TCA-CTTGGTT 4488 >seq849 Length=6452 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || ||||| || ||||| || | ||||||||| Sbjct 1822 TTCGTCAAGACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 1763 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| || || |||||||| || |||||||| || ||||||||||| | Sbjct 1762 GACAATGTCAAGAGCAAAATCCAGGACAAGGAGGGAATCCCACCCGACCAGCAACGGTTG 1703 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| ||||| || ||||| || || || |||| ||| ||||||||| | || || Sbjct 1702 ATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACGCTTAGTGATTATAACATTCAGAA 1644 >seq602 Length=25977 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || |||||||| || ||||||||||| || ||||||||||| || |||||||| Sbjct 8055 GACAAGGAGGGAATCCCCCCCGACCAGCAACGCCTGATCTTCGCCGGCAAGCAGCTCGAG 7996 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | |||||| | || || ||| |||| || || || || || || || || Sbjct 7995 GATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 7940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203671544586392