Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq95 295 7e-75
seq63 138 1e-27
seq125 122 9e-23
seq22 98.7 1e-15
>seq95
Length=147769
Score = 295 bits (326), Expect = 7e-75
Identities = 584/866 (67%), Gaps = 65/866 (8%)
Strand=Plus/Minus
Query 116623 ACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGA 116682
|||||||| | || |||| |||||||| ||||| || || || |||||||| | ||
Sbjct 15026 ACAATACCAT-AGATCTGGCAGATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCTGA 14968
Query 116683 GGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCG 116739
|||| | || || ||||||||| ||||||| | ||| | |||||| | |||||
Sbjct 14967 GGAGATCGATCTCTCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCG 14908
Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799
| |||||| ||||| || || || ||||||||| || |||||||||||||||||
Sbjct 14907 CTTCTTCATCTCCCACGTCCTCGCTTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAA 14848
Query 116800 TCTGGTCGAGCGTTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCT 116858
|| |||||||||||| |||| | |||| ||| | ||||||| || |||||||||||||
Sbjct 14847 CCTTGTCGAGCGTTTCAGCTCCG-AGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGCT 14789
Query 116859 TTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACG 116918
| |||||| ||||||||| | ||||| || | || || |||||||||||| |||
Sbjct 14788 TCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACA 14729
Query 116919 T--GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGA------------- 116963
| ||| | || | | | || | |||| ||||||||||| |
Sbjct 14728 TTAGCGAGCCCAGGCAGCGCAACTAC--CTGTTCAACGCCATCGACAACAGTAAGTTACC 14671
Query 116964 -------------CGATG-------------------------CCGTGCGTCAAAGAGAA 116985
||||| || || |||| ||||
Sbjct 14670 ATACTCCACGACGCGATGCATGGATCACTGACGCTTCATAGTTCCTTGTATCAAGAAGAA 14611
Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGG 117044
|||||| ||||| |||||||||||| || || ||| || | |||| |||||||
Sbjct 14610 GGCCGACTGGGCCCTGCGCTGGATCTGCGACA-AGAACTCGACTTTCGCATCGCGCCTGA 14552
Query 117045 TGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGC 117104
| || || ||||| |||||||| ||||||| || ||||| |||| || ||||
Sbjct 14551 TCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCCATCTTCTGGC 14492
Query 117105 TCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACG 117164
| ||||| || |||||||||||||| || |||||| |||||||||||||| | ||||
Sbjct 14491 TGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCTCTCGTGACG 14432
Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224
||||| ||||| |||||| || || |||||||| ||| | | | || |||
Sbjct 14431 AGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCCAGCC 14372
Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284
| | |||| | ||||| ||||||| || || | |||||| || |||||||| |
Sbjct 14371 CCGATGCCGTCGAGAAGATCATCACCGAGGCCGTAGATATCGAGAAGGAGTTCCTCACGG 14312
Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343
| || || || || ||| || || | || || || | ||| || ||||| |||
Sbjct 14311 ATGCCCTTCCCGTCGCTCTCCTCGGCATGAA-CGCCAATCTTATGCGCCAGTACATTGAG 14253
Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403
|||||||| ||| | |||||| | | |||| | | ||| ||||||| | |||||
Sbjct 14252 TTCGTCGCAGACCGCCTGCTGGTGGCACTGGGCAACAAGAAGTTCTACAACTCCACCAAC 14193
Query 117404 CCGCTGGACTTTATGAACCTCATCTC 117429
|| | ||||| ||| | ||||||
Sbjct 14192 CCCTTCGACTTCATGGAGAACATCTC 14167
>seq63
Length=225829
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 137911 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGACACCATC 137970
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 137971 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 138030
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||||
Sbjct 138031 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 138090
Query 40879 G 40879
|
Sbjct 138091 G 138091
>seq125
Length=94255
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || ||||| |||| || ||| | |
Sbjct 36159 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36218
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || || | ||||| ||||| ||||| |||||||
Sbjct 36219 GATACCATCGATAACG-TGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCA 36277
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| || || ||||| || |||| ||||| ||| ||||||||
Sbjct 36278 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCGGACTACAA 36337
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| |||| || || | ||| ||||
Sbjct 36338 CATCCAGAAGGAGTCCACACTCCACTTGGTGCTGCG 36373
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| |||| ||||| | | |||| | | | | |||||
Sbjct 35955 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCTGACACCATCGACAATGTCAAGTCG 36014
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | || || ||||||||||| |||||||||| || | |||| ||| |||||
Sbjct 36015 AAGATCCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 36074
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| |||||||| |||||||||||||||||||||| ||| || ||
Sbjct 36075 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 36134
Query 40894 CTAGT 40898
|| ||
Sbjct 36135 CTCGT 36139
Score = 113 bits (124), Expect = 5e-20
Identities = 150/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| | || ||||| | | || | | | | |||| |||||
Sbjct 35670 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCGGATACCATCGACAACG-TCAAG 35728
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| || ||||| ||| |||||||||| || || |||| ||| |||
Sbjct 35729 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTTATCTTCGCCGGC 35788
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||| |||| || | |||||||| || |||||||||||||||||| | || ||
Sbjct 35789 AAGCAGTTGGAAGATGGCCGCACCCTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 35848
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| || | ||| || | || ||
Sbjct 35849 CATCTCGTCCTCCGCCTGCGCGGTGG 35874
Score = 109 bits (120), Expect = 6e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || ||||| |||| || ||| | |
Sbjct 36387 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36446
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || || | || || ||||| || ||| |||||||
Sbjct 36447 GATACCATCGATAACG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCA 36505
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| || || |||||||| |||| || || || |||||||||
Sbjct 36506 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAAGACGGTCGTACGCTGTCCGACTACAA 36565
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||| || |||||| | || |||||
Sbjct 36566 CATTCAAAAGGAGTCGACTCTGCA 36589
>seq22
Length=487495
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || | || | ||| ||||| ||||| ||
Sbjct 63945 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTTGAG 64004
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || || |||||||||||||||||| |||| || || || ||| |
Sbjct 64005 GATGGTCGCACTCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 64064
Query 40903 CGCTTGAGGGGCGG 40916
||| || | |||||
Sbjct 64065 CGCCTGCGTGGCGG 64078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515211896767840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |