Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq95 295 7e-75 seq63 138 1e-27 seq125 122 9e-23 seq22 98.7 1e-15 >seq95 Length=147769 Score = 295 bits (326), Expect = 7e-75 Identities = 584/866 (67%), Gaps = 65/866 (8%) Strand=Plus/Minus Query 116623 ACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGA 116682 |||||||| | || |||| |||||||| ||||| || || || |||||||| | || Sbjct 15026 ACAATACCAT-AGATCTGGCAGATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCTGA 14968 Query 116683 GGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCG 116739 |||| | || || ||||||||| ||||||| | ||| | |||||| | ||||| Sbjct 14967 GGAGATCGATCTCTCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCG 14908 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 | |||||| ||||| || || || ||||||||| || ||||||||||||||||| Sbjct 14907 CTTCTTCATCTCCCACGTCCTCGCTTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAA 14848 Query 116800 TCTGGTCGAGCGTTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCT 116858 || |||||||||||| |||| | |||| ||| | ||||||| || ||||||||||||| Sbjct 14847 CCTTGTCGAGCGTTTCAGCTCCG-AGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGCT 14789 Query 116859 TTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACG 116918 | |||||| ||||||||| | ||||| || | || || |||||||||||| ||| Sbjct 14788 TCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACA 14729 Query 116919 T--GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGA------------- 116963 | ||| | || | | | || | |||| ||||||||||| | Sbjct 14728 TTAGCGAGCCCAGGCAGCGCAACTAC--CTGTTCAACGCCATCGACAACAGTAAGTTACC 14671 Query 116964 -------------CGATG-------------------------CCGTGCGTCAAAGAGAA 116985 ||||| || || |||| |||| Sbjct 14670 ATACTCCACGACGCGATGCATGGATCACTGACGCTTCATAGTTCCTTGTATCAAGAAGAA 14611 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGG 117044 |||||| ||||| |||||||||||| || || ||| || | |||| ||||||| Sbjct 14610 GGCCGACTGGGCCCTGCGCTGGATCTGCGACA-AGAACTCGACTTTCGCATCGCGCCTGA 14552 Query 117045 TGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGC 117104 | || || ||||| |||||||| ||||||| || ||||| |||| || |||| Sbjct 14551 TCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCCATCTTCTGGC 14492 Query 117105 TCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACG 117164 | ||||| || |||||||||||||| || |||||| |||||||||||||| | |||| Sbjct 14491 TGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCTCTCGTGACG 14432 Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 ||||| ||||| |||||| || || |||||||| ||| | | | || ||| Sbjct 14431 AGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCCAGCC 14372 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | | |||| | ||||| ||||||| || || | |||||| || |||||||| | Sbjct 14371 CCGATGCCGTCGAGAAGATCATCACCGAGGCCGTAGATATCGAGAAGGAGTTCCTCACGG 14312 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343 | || || || || ||| || || | || || || | ||| || ||||| ||| Sbjct 14311 ATGCCCTTCCCGTCGCTCTCCTCGGCATGAA-CGCCAATCTTATGCGCCAGTACATTGAG 14253 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 |||||||| ||| | |||||| | | |||| | | ||| ||||||| | ||||| Sbjct 14252 TTCGTCGCAGACCGCCTGCTGGTGGCACTGGGCAACAAGAAGTTCTACAACTCCACCAAC 14193 Query 117404 CCGCTGGACTTTATGAACCTCATCTC 117429 || | ||||| ||| | |||||| Sbjct 14192 CCCTTCGACTTCATGGAGAACATCTC 14167 >seq63 Length=225829 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 137911 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGACACCATC 137970 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 137971 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 138030 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 138031 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 138090 Query 40879 G 40879 | Sbjct 138091 G 138091 >seq125 Length=94255 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || ||||| |||| || ||| | | Sbjct 36159 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36218 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| ||||| ||||| ||||||| Sbjct 36219 GATACCATCGATAACG-TGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCA 36277 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||||| || |||| ||||| ||| |||||||| Sbjct 36278 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCGGACTACAA 36337 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || || | ||| |||| Sbjct 36338 CATCCAGAAGGAGTCCACACTCCACTTGGTGCTGCG 36373 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| |||| ||||| | | |||| | | | | ||||| Sbjct 35955 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCTGACACCATCGACAATGTCAAGTCG 36014 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | || || ||||||||||| |||||||||| || | |||| ||| ||||| Sbjct 36015 AAGATCCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 36074 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| |||||||| |||||||||||||||||||||| ||| || || Sbjct 36075 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 36134 Query 40894 CTAGT 40898 || || Sbjct 36135 CTCGT 36139 Score = 113 bits (124), Expect = 5e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || ||||| | | || | | | | |||| ||||| Sbjct 35670 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCGGATACCATCGACAACG-TCAAG 35728 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || ||||| ||| |||||||||| || || |||| ||| ||| Sbjct 35729 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTTATCTTCGCCGGC 35788 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||| |||| || | |||||||| || |||||||||||||||||| | || || Sbjct 35789 AAGCAGTTGGAAGATGGCCGCACCCTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 35848 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || | ||| || | || || Sbjct 35849 CATCTCGTCCTCCGCCTGCGCGGTGG 35874 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || ||||| |||| || ||| | | Sbjct 36387 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36446 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | || || ||||| || ||| ||||||| Sbjct 36447 GATACCATCGATAACG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCA 36505 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || |||||||| |||| || || || ||||||||| Sbjct 36506 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAAGACGGTCGTACGCTGTCCGACTACAA 36565 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || |||||| | || ||||| Sbjct 36566 CATTCAAAAGGAGTCGACTCTGCA 36589 >seq22 Length=487495 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || | || | ||| ||||| ||||| || Sbjct 63945 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTTGAG 64004 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||||||| |||| || || || ||| | Sbjct 64005 GATGGTCGCACTCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 64064 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | ||||| Sbjct 64065 CGCCTGCGTGGCGG 64078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211896767840