Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq125 111 1e-19 seq63 102 7e-17 seq22 91.5 1e-13 >seq125 Length=94255 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||||| ||| ||||| || || |||||||| || Sbjct 36387 TACCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCG 36328 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||||| ||||| || || ||| |||| ||||||||||| || || | Sbjct 36327 AGAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCG 36268 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| ||| |||| || | Sbjct 36267 GGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCA 36208 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | || || || || ||||| || || || |||||||| Sbjct 36207 CCTCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| |||||||||||||| ||| || || || || || Sbjct 36596 CACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGACAGCGTACGACCGTCTTC 36537 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||||||||||||||| || || || || |||||||| || Sbjct 36536 CAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTG 36477 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| |||| || ||||||| || | || || Sbjct 36476 GATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGATAGTCTT 36417 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 36416 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 36387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| || ||||| ||||| ||||| || |||||| | Sbjct 36122 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 36063 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| | |||||||| || ||||| ||||||||||| || || || || || | Sbjct 36062 GATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTGACATT 36003 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 |||| |||||| | ||||||||||| ||| | || ||||| |||| Sbjct 36002 GTCGATGGTGTCAGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 35953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| || ||||| ||| || | ||| || || Sbjct 35844 GTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGGCCATCTTCCAACTGCTTGCCG 35785 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| || || || ||||| |||||||| || || || Sbjct 35784 GCGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTG 35725 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| ||| |||| ||||||||| | ||| | || |||||||| Sbjct 35724 ACGTTGTCGATGGTATCCGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 35672 >seq63 Length=225829 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||| |||||||||||| || || ||| |||| Sbjct 138089 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138030 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 138029 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 137970 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | ||||||||||| ||| | || ||||| || || || || || || Sbjct 137969 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 137911 >seq22 Length=487495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || ||||||||||| | |||||| |||||| Sbjct 64061 CACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCCTC 64002 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | || | ||||||||| || || || ||||||||||||||||| Sbjct 64001 AAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGT 63942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824404192728