Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq125 120 3e-22
seq63 89.7 6e-13
>seq125
Length=94255
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| || | |||| |||||| || || ||||| || | ||||| || |
Sbjct 36374 ACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACC 36315
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || ||||||||||| ||||| || || ||||||||||| | ||| | | ||||||
Sbjct 36314 GTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTT 36255
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || || | | | | || || |||||||| |||| ||||||
Sbjct 36254 GTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGAT 36195
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || || ||||| || ||||| |||||
Sbjct 36194 AGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159
Score = 116 bits (128), Expect = 4e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009
||| || || || | | ||| | |||||| |||| || |||||||||||| |||||
Sbjct 36620 CTACTGGCCACCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTA 36561
Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|| | ||| || || |||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct 36560 GTCGGACAGCGTACGACCGTCTTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTC 36501
Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | | |||||| ||| ||| || || | | | | || || ||
Sbjct 36500 CGGGGGAATACCCTCCTTATCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGA 36441
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| |||| |||||| || || || || || ||||| || ||||| |||||
Sbjct 36440 TTCCACCTCGAGCGTGATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 36387
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || ||||| || | ||| || || |||| || |||||||| |||
Sbjct 36127 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 36068
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
||||| || | ||||||||||| | || | || |||||| ||| ||| || |||
Sbjct 36067 GCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTG 36008
Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | | | ||||| ||| || || |||| |||||||| ||||| ||
Sbjct 36007 ACATTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 35955
>seq63
Length=225829
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||| || || | || || |||||||| || ||||| |
Sbjct 138091 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 138032
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || ||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 138031 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 137972
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 137971 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 137912
Query 43174 AG 43175
||
Sbjct 137911 AG 137910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571809494485520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |