Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq125 116 2e-21 seq63 105 4e-18 >seq125 Length=94255 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || || || |||||||||||||||||| ||| |||| Sbjct 36598 AGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGACAGCGTACGACCGTCT 36539 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| ||||| ||||||||||| ||| | | |||||| || Sbjct 36538 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTATCC 36479 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | ||||| || || | |||||| || Sbjct 36478 TGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGATAGTC 36419 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || ||||||||||| Sbjct 36418 TTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 36387 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || || || | || || ||||| |||||||| || ||| Sbjct 35874 CCACCGCGCAGGCGGAGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 35815 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 35814 AGGGTGCGGCCATCTTCCAACTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGGGGA 35755 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | ||| | ||| ||||| Sbjct 35754 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCGACC 35695 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| |||||||||| Sbjct 35694 TCAAGGGTGATGGTCTTGCCGGTGA 35670 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | || || ||||| ||||||||||| || Sbjct 36385 CCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 36326 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || |||| || | |||||| || ||||| || || ||||||||||| | |||| Sbjct 36325 AGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 36266 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | ||| | ||||| || Sbjct 36265 -ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCAC 36207 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || || || |||||||| || || ||||||||||| Sbjct 36206 CTCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || || ||||| ||||||||||||||||| ||| |||| Sbjct 36142 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 36083 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | ||||||||||| || | || |||||| || Sbjct 36082 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 36023 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | ||| ||||| || | |||||||| Sbjct 36022 TGGATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTGATGGTC 35963 Query 34358 TTGCCGGT 34365 ||||| || Sbjct 35962 TTGCCAGT 35955 >seq63 Length=225829 Score = 105 bits (116), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| ||| | || || | ||||||||| ||||| || Sbjct 138089 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138030 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 138029 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 137970 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | || | || ||||| || | |||||||| ||||| ||||| || || || ||| Sbjct 137969 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 137910 Query 34382 ATCTGCA 34388 ||||| Sbjct 137909 --CTGCA 137905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067534943040