Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq163 179 8e-40 >seq163 Length=51182 Score = 179 bits (198), Expect = 8e-40 Identities = 291/415 (70%), Gaps = 39/415 (9%) Strand=Plus/Minus Query 253999 ACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGG 254058 |||| || || |||| ||| |||| || ||||| || ||||||||||| |||||||| | Sbjct 21847 ACCTGCCGCACATGCTCTTCTACGGGCCGCCCGGCACCGGCAAGACGTCCACCATCCTCG 21788 Query 254059 CGCTGGCCCGAACC--CTGTT-GGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGA 254115 |||||||| || | || | |||| | | || | ||||||||||||||| | Sbjct 21787 CGCTGGCC--AAGCAGCTCTACGGGCCCGACCTGC-TGCGCTCGCGCGTGCTCGAGCTCA 21731 Query 254116 ACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC----C 254171 |||| || ||||| ||||| | | | |||| ||||||||| |||||| ||| | | Sbjct 21730 ACGCGTCGGACGAGCGCGGCATCGGCATCGTGCGCGACAAGGTCAAGAACTTCGCGCGGC 21671 Query 254172 A--AGATGTCGATTTCGTCGT---------------TCCA--ACC--CGGCTGT------ 254204 | || |||||| || || || | ||| |||| || Sbjct 21670 AGCAGCTGTCGAACCCGCCGGCGGGCCCTGCCGGCGTCGAGTACCGCCGGCGGTATCCGT 21611 Query 254205 --CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGT 254262 ||||| |||||| || | | |||||||||||||| | ||||||| || |||||| Sbjct 21610 GCCCGCCGTTCAAGATCATCGTGCTGGACGAGGCGGATAGCATGACGCAGGATGCGCAGA 21551 Query 254263 CCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCA 254322 ||| || || || |||||||||||| ||||| | ||||| ||||| |||||||||| Sbjct 21550 GCGCGCTGCGGCGGACGATGGAGACGTACTCCCGGATCACGCGGTTTTGTCTGGTGTGCA 21491 Query 254323 ACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||||||| || |||||||| |||||||| ||||||| | |||||||| || Sbjct 21490 ACTACGTGACGCGGATCATCGATCCGCTGGCGAGTCGGTGCTCGAAGTTTCGGTT 21436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073750798845312