Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq12 273 2e-68
seq95 145 7e-30
seq125 104 2e-17
>seq12
Length=708323
Score = 273 bits (302), Expect = 2e-68
Identities = 496/723 (69%), Gaps = 2/723 (0%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| ||||| ||||| || || ||||| || || |||||||| ||||| ||| ||
Sbjct 539363 GATGCAAGGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAG 539304
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || ||||| | || |||||||||| || || ||||| |||
Sbjct 539303 AGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 539244
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
||||| |||||| | || |||| ||||||||||| | ||| | || || ||| |
Sbjct 539243 TTGTACAGCATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGC 539184
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265
|||| || |||| ||| |||| || | || || | |||||||| | ||||| ||
Sbjct 539183 TTCTGGGCACGAACG-GTCTCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAGC 539125
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || ||| | ||||| |||||| || || || | | | || ||||| ||| |
Sbjct 539124 CTCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGT 539065
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| | || | ||| || || |||| || ||||| || ||||| |||||||| ||
Sbjct 539064 CCAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAA 539005
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
||| || || ||||| ||||| || || ||| |||||| | || | ||| ||
Sbjct 539004 CAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAA 538945
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
|| || |||||||||||||||||||||| ||| || || || || | ||| ||||| ||
Sbjct 538944 GACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACC 538885
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || ||||| |||||||||||||| | ||||| || | ||| ||||||
Sbjct 538884 CTGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCT 538825
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| ||| ||| || | | || | || |||| ||| || | || ||
Sbjct 538824 GGTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTGAGGCC 538765
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || ||| | | || || ||||| ||||| ||||| || |||||||| |||||
Sbjct 538764 GATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCTC 538705
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
||||||||||| || | ||| | ||| || |||| || || | ||||| ||| |
Sbjct 538704 AATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGAAGCCAGCTGAGGCTTGGGAGTACC 538645
Query 23746 GGC 23748
|||
Sbjct 538644 GGC 538642
>seq95
Length=147769
Score = 145 bits (160), Expect = 7e-30
Identities = 290/426 (68%), Gaps = 14/426 (3%)
Strand=Plus/Minus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| ||||| || || || ||||| ||||| ||||| || ||| || | || ||
Sbjct 14555 CTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCCATCTTC 14496
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| ||||||| || ||||| |||||||| || || || |||||| | || || ||
Sbjct 14495 TGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCTCTCGT 14436
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT--GTCAATAAAC 58152
||||||||| | ||||| || || || ||||| ||| ||| ||||| ||| | | |
Sbjct 14435 GACGAGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCGCACATCAAGTCGA--AGC 14378
Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212
| | | ||| | || | | || ||||||||||| || | ||||| || |||||
Sbjct 14377 CCAGCCCCGATGCCGTCGAGAAGATCATCACCGAGGCCGTAGATATCGAGAAGGAGTTCC 14318
Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272
|||| || ||||| || || || | ||||| |||||| || | ||| ||||||
Sbjct 14317 TCACGGATGCCCTTCCCGTCGCTCTCCTCGGCATGAACGCCAATCTTATGCGCCAGTACA 14258
Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTACAA 58327
||||||| || || ||| | || || | | |||| || ||| || |||||
Sbjct 14257 TTGAGTTCGTCGCAGACCGCCTGCTGGTGGCACTG---GGCAACAAGAAGTTC--TACAA 14203
Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387
| | | || || || || || ||| | |||||||| | |||||||| ||||| ||
Sbjct 14202 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTAACGGCAAGACCAACTTCTT 14143
Query 58388 CGAAAA 58393
||| ||
Sbjct 14142 CGAGAA 14137
>seq125
Length=94255
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || ||||| |||| || ||| | ||
Sbjct 36387 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36446
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || || || ||| ||||| || | || || ||||||
Sbjct 36447 GATACCATCGATAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAG 36506
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || ||| |||||||| | || || ||| || |||
Sbjct 36507 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAAGACGGTCGTACGCTGTCCGACTACAAC 36566
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||| || |||||||| || |||| ||
Sbjct 36567 ATTCAAAAGGAGTCGACTCTGCACTTGGTGCT 36598
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/208 (71%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || |||||| | || || || |||| || | |||| | ||||| |
Sbjct 35672 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCGGATACCATCGACAACGTCAA---G 35728
Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | ||||||||||||| | || || ||||||||||| || || ||||| |||
Sbjct 35729 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTTATCTTCGCCGGC 35788
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct 35789 AAGCAGTTGGAAGATGGCCGCACCCTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 35848
Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || | ||| | || ||||
Sbjct 35849 CATCTCGTCCTCCGCCTGCGCGGTGGTA 35876
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || || || || ||||| |||| || ||| | ||
Sbjct 36159 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36218
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | || || || || ||||||||| || | ||||| ||||||
Sbjct 36219 GATACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 36278
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || ||| | || ||| | ||| | || || |||
Sbjct 36279 CAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCGGACTACAAC 36338
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || || || || |||| ||
Sbjct 36339 ATCCAGAAGGAGTCCACACTCCACTTGGTGCT 36370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445760081261280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |