Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12 273 2e-68 seq95 145 7e-30 seq125 104 2e-17 >seq12 Length=708323 Score = 273 bits (302), Expect = 2e-68 Identities = 496/723 (69%), Gaps = 2/723 (0%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || ||||| ||||| || || ||||| || || |||||||| ||||| ||| || Sbjct 539363 GATGCAAGGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAG 539304 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || ||||| | || |||||||||| || || ||||| ||| Sbjct 539303 AGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 539244 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||| |||||| | || |||| ||||||||||| | ||| | || || ||| | Sbjct 539243 TTGTACAGCATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGC 539184 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| || |||| ||| |||| || | || || | |||||||| | ||||| || Sbjct 539183 TTCTGGGCACGAACG-GTCTCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAGC 539125 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || ||| | ||||| |||||| || || || | | | || ||||| ||| | Sbjct 539124 CTCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGT 539065 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| | || | ||| || || |||| || ||||| || ||||| |||||||| || Sbjct 539064 CCAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAA 539005 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 ||| || || ||||| ||||| || || ||| |||||| | || | ||| || Sbjct 539004 CAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAA 538945 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || |||||||||||||||||||||| ||| || || || || | ||| ||||| || Sbjct 538944 GACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACC 538885 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || ||||| |||||||||||||| | ||||| || | ||| |||||| Sbjct 538884 CTGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCT 538825 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| ||| || | | || | || |||| ||| || | || || Sbjct 538824 GGTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTGAGGCC 538765 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || ||| | | || || ||||| ||||| ||||| || |||||||| ||||| Sbjct 538764 GATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCTC 538705 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 ||||||||||| || | ||| | ||| || |||| || || | ||||| ||| | Sbjct 538704 AATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGAAGCCAGCTGAGGCTTGGGAGTACC 538645 Query 23746 GGC 23748 ||| Sbjct 538644 GGC 538642 >seq95 Length=147769 Score = 145 bits (160), Expect = 7e-30 Identities = 290/426 (68%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||| || || || ||||| ||||| ||||| || ||| || | || || Sbjct 14555 CTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCCATCTTC 14496 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| ||||||| || ||||| |||||||| || || || |||||| | || || || Sbjct 14495 TGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCTCTCGT 14436 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT--GTCAATAAAC 58152 ||||||||| | ||||| || || || ||||| ||| ||| ||||| ||| | | | Sbjct 14435 GACGAGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCGCACATCAAGTCGA--AGC 14378 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | | | ||| | || | | || ||||||||||| || | ||||| || ||||| Sbjct 14377 CCAGCCCCGATGCCGTCGAGAAGATCATCACCGAGGCCGTAGATATCGAGAAGGAGTTCC 14318 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 |||| || ||||| || || || | ||||| |||||| || | ||| |||||| Sbjct 14317 TCACGGATGCCCTTCCCGTCGCTCTCCTCGGCATGAACGCCAATCTTATGCGCCAGTACA 14258 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTACAA 58327 ||||||| || || ||| | || || | | |||| || ||| || ||||| Sbjct 14257 TTGAGTTCGTCGCAGACCGCCTGCTGGTGGCACTG---GGCAACAAGAAGTTC--TACAA 14203 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 | | | || || || || || ||| | |||||||| | |||||||| ||||| || Sbjct 14202 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTAACGGCAAGACCAACTTCTT 14143 Query 58388 CGAAAA 58393 ||| || Sbjct 14142 CGAGAA 14137 >seq125 Length=94255 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| |||| || ||| | || Sbjct 36387 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36446 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||| ||||| || | || || |||||| Sbjct 36447 GATACCATCGATAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAG 36506 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| |||||||| | || || ||| || ||| Sbjct 36507 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAAGACGGTCGTACGCTGTCCGACTACAAC 36566 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || |||||||| || |||| || Sbjct 36567 ATTCAAAAGGAGTCGACTCTGCACTTGGTGCT 36598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| | || || || |||| || | |||| | ||||| | Sbjct 35672 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCGGATACCATCGACAACGTCAA---G 35728 Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | ||||||||||||| | || || ||||||||||| || || ||||| ||| Sbjct 35729 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCCTTATCTTCGCCGGC 35788 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||||||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 35789 AAGCAGTTGGAAGATGGCCGCACCCTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 35848 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || | ||| | || |||| Sbjct 35849 CATCTCGTCCTCCGCCTGCGCGGTGGTA 35876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || || ||||| |||| || ||| | || Sbjct 36159 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36218 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||||||||| || | ||||| |||||| Sbjct 36219 GATACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 36278 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| | || ||| | ||| | || || ||| Sbjct 36279 CAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCGGACTACAAC 36338 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || |||| || Sbjct 36339 ATCCAGAAGGAGTCCACACTCCACTTGGTGCT 36370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760081261280