Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq95 114 2e-20 seq12 87.8 2e-12 >seq95 Length=147769 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| |||| ||||||||| | | || | |||||||| Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| |||||||| ||||||||||| || ||||| || ||||||||||| ||||| Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 |||||||| || || || || ||||| || || || Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAG 14555 >seq12 Length=708323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 285/441 (65%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 ||||||||||| || | || | | | | | ||| || || | || ||||||| | | Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || |||| | | || || ||||| |||||||| || ||||| ||||| ||| Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 || || | | | | || || ||||| ||||| || || ||||| | Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | ||| | ||||||||| || | ||| ||||| | | || || || ||||| || ||| Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | || | |||||||| || || || | | ||| ||||| | ||||| Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA--TTACTAATTGATAGAC 63546 |||| ||||| || | ||||||| ||| | || |||||| | |||| || | Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || || || | || || || | ||||| || | || || ||||| || | Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706 Query 63607 CTATGCTATCATCGATCATGT 63627 | ||||| || || |||||| Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808672335520