Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12 118 2e-21 seq95 104 3e-17 >seq12 Length=708323 Score = 118 bits (130), Expect = 2e-21 Identities = 292/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| || | || ||| | | ||||| || |||| || ||||||| | | Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || | | | || || ||||| |||||||| || ||||| ||||| ||| Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | | | | ||| || ||||| ||||| || || ||||| | Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | ||| | ||||||||| || | ||| ||||| | | || || || ||||| || ||| Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | || | |||||||| || || || | | ||| ||||| | || ||| Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGAC 80218 ||||| ||||| || | |||||||| ||| | || |||||| | |||| || | Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | || || || || | || || || | ||||| || | ||||| ||||| |||| Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706 Query 80279 CTATGCTATCATCAATCATGT 80299 | ||||| || || |||||| Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685 >seq95 Length=147769 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| |||| ||||||||| | | || || ||||| || Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || ||||| |||||||| ||||||||||| || ||||| || ||||| || || || ||| Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGC 50102 |||||||| || || || || ||||| || Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGC 14549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718258618539760