Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq12 118 2e-21
seq95 104 3e-17
>seq12
Length=708323
Score = 118 bits (130), Expect = 2e-21
Identities = 292/441 (66%), Gaps = 4/441 (1%)
Strand=Plus/Minus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
||||||||||| || | || ||| | | ||||| || |||| || ||||||| | |
Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980
|| || | | | || || ||||| |||||||| || ||||| ||||| |||
Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004
Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040
|| || | | | | ||| || ||||| ||||| || || ||||| |
Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944
Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100
| ||| | ||||||||| || | ||| ||||| | | || || || ||||| || |||
Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884
Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160
|| || | || | |||||||| || || || | | ||| ||||| | || |||
Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824
Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGAC 80218
||||| ||||| || | |||||||| ||| | || |||||| | |||| || |
Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766
Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278
| || || || || | || || || | ||||| || | ||||| ||||| ||||
Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706
Query 80279 CTATGCTATCATCAATCATGT 80299
| ||||| || || ||||||
Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685
>seq95
Length=147769
Score = 104 bits (114), Expect = 3e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| || || ||||| ||| |||| ||||||||| | | || || ||||| ||
Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| ||||| |||||||| ||||||||||| || ||||| || ||||| || || || |||
Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGC 50102
|||||||| || || || || ||||| ||
Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGC 14549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718258618539760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |