Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 109 7e-19 seq95 100 4e-16 >seq12 Length=708323 Score = 109 bits (120), Expect = 7e-19 Identities = 290/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| || | | | | | | ||||| || || || || ||||||| | | Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || || | | | || || ||||| |||||||| || ||||| ||||| ||| Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 || || | | | | ||| || ||||| ||||| || || ||||| | Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | ||| | ||||||||| || | ||| ||||| | | || || || ||||| || ||| Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | || | |||||||| || || || | | ||| ||||| | || ||| Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTAATTGATAGAC 72301 | ||| ||||| || | |||||||| ||| | || |||||| || |||| || | Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || || | || || || | ||||| || | ||||| ||||| |||| Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706 Query 72362 CTATACTATCATCCATCATGT 72382 | || || || ||| |||||| Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||| ||||||| | || || | ||||| |||||||||||| Sbjct 540287 TCCTGGTCGACAGTGAACTGGATGGGAGCAGCGGCAGCCTGGGTACGGAGATAGTACATG 540228 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || |||||||| |||| ||| || ||||| || | ||| || | | Sbjct 540227 CCAGTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGGAGGTGATCTTGCCCATCG-T 540169 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 |||||| |||||||| || | ||||| |||||||||||||| || | ||| || Sbjct 540168 AGGATCCTTCATGTGAATGTTGAGGGACTGCGACTGATCGATGAAGGCACCACGGTCAGC 540109 Query 70968 AGCCAT 70973 |||||| Sbjct 540108 AGCCAT 540103 >seq95 Length=147769 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| |||| |||||| || | | || | ||||| || Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| |||||||| ||||||||||| || ||||| || || || || || |||||| Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 |||||||| || || || |||||||| || || || Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAG 14555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671129686601840