Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq12 109 7e-19
seq95 100 4e-16
>seq12
Length=708323
Score = 109 bits (120), Expect = 7e-19
Identities = 290/441 (66%), Gaps = 4/441 (1%)
Strand=Plus/Minus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
||||||||||| || | | | | | | ||||| || || || || ||||||| | |
Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|| || | | | || || ||||| |||||||| || ||||| ||||| |||
Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123
|| || | | | | ||| || ||||| ||||| || || ||||| |
Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944
Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183
| ||| | ||||||||| || | ||| ||||| | | || || || ||||| || |||
Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884
Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243
|| || | || | |||||||| || || || | | ||| ||||| | || |||
Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824
Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTGCTAATTGATAGAC 72301
| ||| ||||| || | |||||||| ||| | || |||||| || |||| || |
Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766
Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361
| || || || || | || || || | ||||| || | ||||| ||||| ||||
Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706
Query 72362 CTATACTATCATCCATCATGT 72382
| || || || ||| ||||||
Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685
Score = 89.7 bits (98), Expect = 7e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || ||||| ||||||| | || || | ||||| ||||||||||||
Sbjct 540287 TCCTGGTCGACAGTGAACTGGATGGGAGCAGCGGCAGCCTGGGTACGGAGATAGTACATG 540228
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907
|| || || |||||||| |||| ||| || ||||| || | ||| || | |
Sbjct 540227 CCAGTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGGAGGTGATCTTGCCCATCG-T 540169
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
|||||| |||||||| || | ||||| |||||||||||||| || | ||| ||
Sbjct 540168 AGGATCCTTCATGTGAATGTTGAGGGACTGCGACTGATCGATGAAGGCACCACGGTCAGC 540109
Query 70968 AGCCAT 70973
||||||
Sbjct 540108 AGCCAT 540103
>seq95
Length=147769
Score = 100 bits (110), Expect = 4e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115
|||| || || ||||| ||| |||| |||||| || | | || | ||||| ||
Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457
Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175
|| ||||| |||||||| ||||||||||| || ||||| || || || || || ||||||
Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517
Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213
|||||||| || || || |||||||| || || ||
Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAG 14555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671129686601840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |