Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq95 150 3e-31
seq12 150 3e-31
>seq95
Length=147769
Score = 150 bits (166), Expect = 3e-31
Identities = 241/337 (72%), Gaps = 12/337 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| | ||||| || ||||||| || ||| |||||||
Sbjct 15014 ATCTGGCAGATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCTGAGGAGATCGATCTC 14955
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||||| |||| ||| | | ||| | | || |||||| || || ||
Sbjct 14954 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGCTTCTTCATCTCC 14895
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197
||| | | || ||||| |||| ||| ||||| ||||||||||| || | ||| || ||
Sbjct 14894 CACGTCCTCGCTTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTCGA-GCG 14836
Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255
||| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||||
Sbjct 14835 TTTCAGCTC-CGAGGTCCAGATCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCATG 14778
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314
|| |||||| | ||||| || | |||||| || || |||| |||||| |||| ||
Sbjct 14777 ATGGAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTAGCGAGCCC 14718
Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349
||| || || || || || ||||| |||||||
Sbjct 14717 AGGCAGCGCAACTAC---CTGTTCAACGCCATCGACA 14684
Score = 122 bits (134), Expect = 1e-22
Identities = 292/437 (67%), Gaps = 25/437 (6%)
Strand=Plus/Minus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
||| | || || || || || ||||| |||||||| || || || |||||||
Sbjct 14555 CTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCCATCTTC 14496
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||||| |||||||| || ||||||||||| || || | ||||||| | || |||||
Sbjct 14495 TGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCTCTCGT 14436
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTC---- 125601
|||||||| | || ||||| || || ||||| ||||| ||| |||
Sbjct 14435 GACGAGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCGCAC--ATCAA-GTCGAAG 14379
Query 125602 CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661
|| || | ||| | || || ||| |||||| |||| ||||| || |
Sbjct 14378 CCCAGCCCCGATGC--CGTCGAGAAGATCATCA---------CCGAGGCCGTAGATATCG 14330
Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721
| | ||||| || || || |||| || ||| | | ||||||||| ||| || |
Sbjct 14329 AGAAGGAGTTCCTCACGGATGCCCTTCCCGTCGCTCTCCTCGGCATGAACGCCAATCTTA 14270
Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA 125781
|| || ||||||| ||||| || ||||| || || ||| | || ||| |||||
Sbjct 14269 TGCGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTGGTGGCACTG---GGCAACAAGA 14213
Query 125782 ---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838
| |||||| ||| || ||||| || |||||| | ||| || || | || ||||
Sbjct 14212 AGTTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTAACGGCAAGA 14153
Query 125839 CCAACTTTTTCGAGAAG 125855
||||||| |||||||||
Sbjct 14152 CCAACTTCTTCGAGAAG 14136
>seq12
Length=708323
Score = 150 bits (166), Expect = 3e-31
Identities = 329/485 (68%), Gaps = 6/485 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| | ||| | || || ||||| || ||
Sbjct 538882 CAGGGTGGCAACAAGCGTCCCGGTGCATTCGCCATTTACCTCGAGCCGTGGCATGCCGAT 538941
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || ||| | || | ||||| ||| || ||||||| || || | |||
Sbjct 538942 GTCTTCAGCTTCCTTGACCTCCGCAAGAACCACGGAAAGGAAGAGGTTCGCGCTCGTGAC 539001
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
||||||| || || ||| | || ||| | ||||||||||| ||| | | ||| |
Sbjct 539002 CTGTTTTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAACAGAACGGCACC 539061
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || || || ||||| |||| || ||||| |||||
Sbjct 539062 TGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGACGAGTTC 539121
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGACGAGTCGATGCACG 97174
||||| |||| | |||||| | ||||| | | |||||||| ||| ||| |
Sbjct 539122 GAGGCTCTGTACGAGCAGTACGAGAAGGAGGGTCGGGGTCGTGAGACCGTTCG-TGC-CC 539179
Query 97175 AGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232
|||| || ||| | |||| || ||| ||||||||| |||||||| | || | ||| ||
Sbjct 539180 AGAAGCTCTGGTACGCCATTCTTGA-GGCTCAGGTCGAGACTGGCAACCCCTTCATGCTG 539238
Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292
|||||||| | || ||||| |||||||| || | ||||||||| |||||
Sbjct 539239 TACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCTCC 539298
Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352
|| || ||| || ||||| |||||| | | || || ||| || || ||| ||
Sbjct 539299 AACCTCTGCTGCGAGATTGTCGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAACCTT 539358
Query 97353 GCATC 97357
|||||
Sbjct 539359 GCATC 539363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741048695485840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |