Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq95 150 3e-31 seq12 150 3e-31 >seq95 Length=147769 Score = 150 bits (166), Expect = 3e-31 Identities = 241/337 (72%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| | ||||| || ||||||| || ||| ||||||| Sbjct 15014 ATCTGGCAGATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCTGAGGAGATCGATCTC 14955 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | ||| | | || |||||| || || || Sbjct 14954 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGCTTCTTCATCTCC 14895 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| | | || ||||| |||| ||| ||||| ||||||||||| || | ||| || || Sbjct 14894 CACGTCCTCGCTTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTCGA-GCG 14836 Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| ||| ||| | || || |||| ||| ||||| ||||| ||||| |||||| Sbjct 14835 TTTCAGCTC-CGAGGTCCAGATCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCATG 14778 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || |||||| | ||||| || | |||||| || || |||| |||||| |||| || Sbjct 14777 ATGGAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTAGCGAGCCC 14718 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 ||| || || || || || ||||| ||||||| Sbjct 14717 AGGCAGCGCAACTAC---CTGTTCAACGCCATCGACA 14684 Score = 122 bits (134), Expect = 1e-22 Identities = 292/437 (67%), Gaps = 25/437 (6%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||| | || || || || || ||||| |||||||| || || || ||||||| Sbjct 14555 CTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCCATCTTC 14496 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| |||||||| || ||||||||||| || || | ||||||| | || ||||| Sbjct 14495 TGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCTCTCGT 14436 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTC---- 125601 |||||||| | || ||||| || || ||||| ||||| ||| ||| Sbjct 14435 GACGAGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCGCAC--ATCAA-GTCGAAG 14379 Query 125602 CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661 || || | ||| | || || ||| |||||| |||| ||||| || | Sbjct 14378 CCCAGCCCCGATGC--CGTCGAGAAGATCATCA---------CCGAGGCCGTAGATATCG 14330 Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 | | ||||| || || || |||| || ||| | | ||||||||| ||| || | Sbjct 14329 AGAAGGAGTTCCTCACGGATGCCCTTCCCGTCGCTCTCCTCGGCATGAACGCCAATCTTA 14270 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA 125781 || || ||||||| ||||| || ||||| || || ||| | || ||| ||||| Sbjct 14269 TGCGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTGGTGGCACTG---GGCAACAAGA 14213 Query 125782 ---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 | |||||| ||| || ||||| || |||||| | ||| || || | || |||| Sbjct 14212 AGTTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTAACGGCAAGA 14153 Query 125839 CCAACTTTTTCGAGAAG 125855 ||||||| ||||||||| Sbjct 14152 CCAACTTCTTCGAGAAG 14136 >seq12 Length=708323 Score = 150 bits (166), Expect = 3e-31 Identities = 329/485 (68%), Gaps = 6/485 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| | ||| | || || ||||| || || Sbjct 538882 CAGGGTGGCAACAAGCGTCCCGGTGCATTCGCCATTTACCTCGAGCCGTGGCATGCCGAT 538941 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||| | || | ||||| ||| || ||||||| || || | ||| Sbjct 538942 GTCTTCAGCTTCCTTGACCTCCGCAAGAACCACGGAAAGGAAGAGGTTCGCGCTCGTGAC 539001 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||||| || || ||| | || ||| | ||||||||||| ||| | | ||| | Sbjct 539002 CTGTTTTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAACAGAACGGCACC 539061 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || ||||| |||| || ||||| ||||| Sbjct 539062 TGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGACGAGTTC 539121 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| | |||||| | ||||| | | |||||||| ||| ||| | Sbjct 539122 GAGGCTCTGTACGAGCAGTACGAGAAGGAGGGTCGGGGTCGTGAGACCGTTCG-TGC-CC 539179 Query 97175 AGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| || ||| | |||| || ||| ||||||||| |||||||| | || | ||| || Sbjct 539180 AGAAGCTCTGGTACGCCATTCTTGA-GGCTCAGGTCGAGACTGGCAACCCCTTCATGCTG 539238 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | || ||||| |||||||| || | ||||||||| ||||| Sbjct 539239 TACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCTCC 539298 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || || ||| || ||||| |||||| | | || || ||| || || ||| || Sbjct 539299 AACCTCTGCTGCGAGATTGTCGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAACCTT 539358 Query 97353 GCATC 97357 ||||| Sbjct 539359 GCATC 539363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741048695485840