Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq95 118 1e-21 seq12 105 8e-18 >seq95 Length=147769 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || ||||| ||| |||| ||||||||| | | || || ||||| || Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||| |||||||| ||||||||||| || ||||| || ||||||||||| |||||| Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 |||||||| || || || || ||||| || || || Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAG 14555 >seq12 Length=708323 Score = 105 bits (116), Expect = 8e-18 Identities = 289/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||||||||| || | || | | | | ||||| || || | || ||||||| | | Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || |||| | | || || ||||| |||||||| || ||||| ||||| ||| Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || || | | | | || || ||||| ||||| || || ||||| | Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | ||| | ||||||||| || | ||| ||||| | | || || || ||||| || ||| Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | || | |||||||| || || || | | ||| ||||| | ||||| Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGAC 63495 |||| ||||| || | |||||||| ||| | || |||||| | |||| || | Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | || || || || | || || || | ||||| || | || || |||||||||| Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706 Query 63556 CTATGCTATCATCGATCATGT 63576 | ||||| || || |||||| Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622938369723440