Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq95 118 1e-21
seq12 105 8e-18
>seq95
Length=147769
Score = 118 bits (130), Expect = 1e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || ||||| ||| |||| ||||||||| | | || || ||||| ||
Sbjct 14398 AACAGCAGGCAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAG 14457
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| ||||| |||||||| ||||||||||| || ||||| || ||||||||||| ||||||
Sbjct 14458 AAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCA 14517
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452
|||||||| || || || || ||||| || || ||
Sbjct 14518 CTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAG 14555
>seq12
Length=708323
Score = 105 bits (116), Expect = 8e-18
Identities = 289/441 (66%), Gaps = 4/441 (1%)
Strand=Plus/Minus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
||||||||||| || | || | | | | ||||| || || | || ||||||| | |
Sbjct 539123 TCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTC 539064
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|| |||| | | || || ||||| |||||||| || ||||| ||||| |||
Sbjct 539063 CAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAAC 539004
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
|| || | | | | || || ||||| ||||| || || ||||| |
Sbjct 539003 AGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAG 538944
Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377
| ||| | ||||||||| || | ||| ||||| | | || || || ||||| || |||
Sbjct 538943 ACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCC 538884
Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437
|| || | || | |||||||| || || || | | ||| ||||| | |||||
Sbjct 538883 TGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTGCTG 538824
Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGAC 63495
|||| ||||| || | |||||||| ||| | || |||||| | |||| || |
Sbjct 538823 GTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTG--AGGC 538766
Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555
| || || || || | || || || | ||||| || | || || ||||||||||
Sbjct 538765 CGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCT 538706
Query 63556 CTATGCTATCATCGATCATGT 63576
| ||||| || || ||||||
Sbjct 538705 CAATGCTGTCCTCCTTCATGT 538685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622938369723440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |