Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 297 5e-75 >seq12 Length=708323 Score = 297 bits (328), Expect = 5e-75 Identities = 1038/1602 (65%), Gaps = 30/1602 (2%) Strand=Plus/Plus Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| || || |||| || || ||| || |||| ||||| || | | |||||||| || Sbjct 538638 CAACGCCGGTACTCCCAAGCCTCAGCTGGCTTCCTGCTTCCTCATCGACATGAAGGAGGA 538697 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 ||| |||||||||| || || || |||| || || | |||||||||| || || Sbjct 538698 CAGCATTGAGGGTATCTACGATACCCTGAAGACCTGCGCCATGATTTCCAAGACCGCCGG 538757 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAG 363751 || || || | ||||| | |||| || || | ||| || ||| ||||| Sbjct 538758 TGGTATCGGCCTCAATGTCCACCGTATTCGCGCTACTGG-CAGCTATATTGCTGGCACCA 538816 Query 363752 GGGGATACTCG-AATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || ||| | || || || |||| ||||| ||||||| |||| || || | || Sbjct 538817 ACGG-TACCAGCAACGGCCTCATTCCTATGCTCCGTGTGTACAACAACACCGCCCGCTAT 538875 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 |||||||||||||| ||||| || || || || || || |||||||| ||| Sbjct 538876 GTCGACCAGGGTGGCAACAAGCGTCCCGGTGCATTCGCCATTTACCTCGAGCCGTGGCAT 538935 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 |||||| | || || ||||| ||||| || ||| ||||| || || | || || Sbjct 538936 GCCGATGTCTTCAGCTTCCTTGACCTCCGCAAGAACCACGGAAAGGAAGAGGTTCGCGCT 538995 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990 ||||| ||||| || || || ||| | | || | || |||||||| || || ||| Sbjct 538996 CGTGACCTGTTTTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAA-CAGAA 539054 Query 363991 AAGAAT-TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGA 364049 | | ||| | || | ||||| |||| || || |||||| |||| || | || || Sbjct 539055 CGGCACCTGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGA 539114 Query 364050 CGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCC 364109 ||| | | ||||| ||||| |||| || |||||| || |||| |||| ||| Sbjct 539115 CGAGTTCGAGGCTCTGTACGAGCAGTACGAGAAGGAGGGTCGGGGTCGTGAGACCGTTCG 539174 Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 || |||||||| |||| ||||| | || | ||| | ||||| || | |||| || Sbjct 539175 TGCCCAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGGTCGAGACTGGCAACCCCTTCAT 539234 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | ||||||| || |||||||||||| ||||||| || ||||||| || | || ||| Sbjct 539235 GCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCA-TCCGCA 539293 Query 364230 G-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTA 364288 | |||||| || ||||||| | || ||||| || || || ||| || || || | Sbjct 539294 GCTCCAACCTCTGCTGCGAGATTGTCGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCA 539353 Query 364289 ACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AGATGGTACTTT-TGACCACC 364342 ||||||| || | || ||||| | ||||| || || || | ||| |||| | Sbjct 539354 ACCTTGCATCCCTGGCACTTCCTACCTTTGTCAATGTCGAGCAGGGAGTTTATGACTTCA 539413 Query 364343 AGCATCTTTATGACGTAACCTATCA--TGCTACT-TGCAATCTCGACAAGGTTATCGACA 364399 || | ||| |||| || || ||| |||| | || || ||||| | ||||||| Sbjct 539414 AGAAGCTTCATGATGTCAC---TCAAGTGCTCGTCAAGAACCTGAACAAGATCATCGACA 539470 Query 364400 AGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTC 364459 || | || || | || || || | | || ||||| |||||||| |||| | Sbjct 539471 TCAACCACTACCCCGTGCCGGAGGCTAGGAGGAGCAACATGCGCCATCGCCCCATTGCTG 539530 Query 364460 TTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTG 364519 ||||||| | || ||||| || | ||| || || ||| | || ||||| |||| Sbjct 539531 TTGGTGTCAACGGTCTCGCCGATGCTTTCCTGGCTCTTCGTATGCCCTTCGATTCTCCTG 539590 Query 364520 ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTT 364579 | || || || | ||||||| || || || || || || | ||||| | Sbjct 539591 AGGCCAAGCACCTCAACATTCAGATCTTCGAGACCATCTACCACGCTGCTCTTACTGCCT 539650 Query 364580 CGTGTGATTTGGCAAA--AACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 | ||| | || || ||| | || || || | |||| ||| ||| Sbjct 539651 CCATTGAGCTCGCCAAGCAAC--ACGGCCCCTATGAGACGTTCCAGGGTAGCCCCGCTTC 539708 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGA 364697 || || | | |||| ||| | ||||| | || ||| || ||| ||||||| Sbjct 539709 CCAAGGCATTCTGCAGTATGACATGTGGAACAAGGCCCCCACTGACCTGTGGGACTGGGA 539768 Query 364698 TACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC---CTCGTTACAGCGCC 364754 | || | | || |||| ||| ||||||||| |||||| ||||| Sbjct 539769 CAGCCTGAAGGCTGAGGTCGCCCAGCACGGTGTCCGCAACTCCCTGCTCGTT---GCGCC 539825 Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814 |||||| || || ||||| ||||| || || ||||||||||||||| || | || Sbjct 539826 CATGCCTACTGCCTCTACCAGTCAGATTCTTGGCTTCAACGAGTGCTTCGAGCCTTACAC 539885 Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 || |||| || ||||| || | |||| || || | ||| || || | || Sbjct 539886 TTCGAACATTTACTCTCGCCGTGTCTTGGCCGGTGAGTTCCAGGTCGTCAACCCCTGGCT 539945 Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934 | ||||| || ||||| ||| |||||| ||| ||||||||| ||||| || Sbjct 539946 CCTGAAGGACCTGGTCGACCTCGGTCTGTGGTCGGACCAGATGAAGAACCGCATCATTGC 540005 Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994 | || || || | ||| | ||||| | || || || | ||| | | ||||| Sbjct 540006 TTCCAACGGCTCCATCCAGCAAATTCCCAACATCCCGGATGACATCAAGGCGCTCTACAA 540065 Query 364995 AACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTT 365054 ||||| ||||| | || ||| || || | | ||||| || || || ||||| || Sbjct 540066 GACCGTCTGGGAGCTCTCTCAGCGTACCATCGTCCAGATGGCTGCTGACCGTGGTGCCTT 540125 Query 365055 TATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTAC 365114 ||| |||| ||||| | ||| | ||||| | || || | |||| | || Sbjct 540126 CATCGATCAGTCGCAGTCCCTCAACATTCACATGAAGGATCCTACGATGGGCAAGATCAC 540185 Query 365115 ATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| ||| ||| ||||| |||||| ||||| || Sbjct 540186 CTCCATGCACTTCGCCGGTTGGAAGCTCGGTCTCAAGACTGG 540227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303334663086788