Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq745 127 1e-24
seq1066 104 2e-17
seq125 86.0 4e-12
>seq745
Length=2003
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 413 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 354
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 353 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 319
>seq1066
Length=610
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 365 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 306
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 305 GCCGGTATTTAGCCTTA 289
>seq125
Length=94255
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | |||||| || ||||| |||||||||||| ||||| || |||
Sbjct 36613 CCACCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAC 36554
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || | || || ||||| || || || || || || || | |||
Sbjct 36553 AGCGTACGACCGTCTTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 36494
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || || ||| || || |||||| || | || ||||| | ||| ||
Sbjct 36493 ATACCCTCCTTATCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACC 36434
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || ||||| || || || | ||| || ||||| ||||||||
Sbjct 36433 TCGAGCGTGATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 36387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334942570820354
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |