Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq135 114 3e-20
seq95 107 4e-18
seq66 93.3 9e-14
>seq135
Length=84039
Score = 114 bits (126), Expect = 3e-20
Identities = 160/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| |||||| || || || |||| ||||| ||||| |||
Sbjct 47964 GGCGAGGACCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCTAAGATCCTGCTCAAC 48023
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| | | ||||||||| | || || ||||| |||| || || || |
Sbjct 48024 CAGACTCACCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTTCTCGGCCCTAACGGTTCC 48083
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| |||| ||| || ||||||||||| |||| ||||| | ||| ||||| | |||
Sbjct 48084 GGCAAGACCACCCTCATGCGCGCCATCAACAACGAGCAGCTCG-AGGGTTTCCCCAAGCA 48142
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|||||||| | ||| || || || ||||||||| | |||||
Sbjct 48143 GTCTGAGGTCAAGACCGTCTACGTCGAGCACGACCTGGACTC 48184
Score = 93.3 bits (102), Expect = 9e-14
Identities = 94/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761
|| || || ||||||||||||||||||||||| || | || ||| | | | | |||
Sbjct 48324 TCCCTCTCAGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGTCTTTGAG-GAGCC 48382
Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820
||| |||| |||||||||||||| ||||||||||||||| || ||||| || |||||
Sbjct 48383 TGATATCCTCCTGCTTGATGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 48442
Score = 89.7 bits (98), Expect = 1e-12
Identities = 103/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| |||||||| || || || ||| ||||| | ||| | | || ||
Sbjct 49368 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCTTGC 49427
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| |||||| | |||||| ||||||| |||||||||||||||||||| || ||||| ||
Sbjct 49428 TC-GTGGCAGCGTCCTCACTTGATCGTCCTCGACGAGCCTACCAACTACCTTGACCGTGA 49486
Query 280823 GAGCCTGGGCGCTCTG 280838
|| || ||||||
Sbjct 49487 CTCTCTCGGTGCTCTG 49502
>seq95
Length=147769
Score = 107 bits (118), Expect = 4e-18
Identities = 275/409 (67%), Gaps = 20/409 (5%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 14140 TCGAAGAAGTTGGTCTTGCCGTTAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 14199
Query 251623 GCATTGT---ACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679
| |||| ||| |||| | ||| ||||| || | | ||||||||| || |||||
Sbjct 14200 GAGTTGTAGAACTTCTTG---TTGCCCAGTGCCACCAGCAGGCGGTCTGCGACGAACTCA 14256
Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACA 251738
| ||||| | ||| || | | ||||||||| | | | |||| |||| || ||
Sbjct 14257 ATGTACTGGCGCATAAGATTGGCGTTCATGCCGAGGAGAGCGAC-GGGAAGGGCATCCGT 14315
Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC--CTGTGCCAGA 251796
|| ||| ||||| ||| | | || ||||| | || |||| | | | | |
Sbjct 14316 GAGGAACTCCTTCTCGATATCTACGGCCTCGGTGATGAT---CTTCTCGACGGCATCGGG 14372
Query 251797 G-ACAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGG--TGCAGACC 251852
| |||| || | | ||| |||| | || || || || || |||| |||
Sbjct 14373 GCTGGGCTTCGACTTGATGTGCGAGAACAGCAGGCAAGCGAA---GTCGGTATGCATACC 14429
Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912
|||||| ||| ||||| |||||| || | | || || ||||| | ||||| ||| |
Sbjct 14430 CTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTGAGACCGGGCATGAGGCCACGCTTCTT 14489
Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961
||||||||||| | ||||||||| ||| | | ||||||||||
Sbjct 14490 CAGCCAGAAGATGGAAGCGAAGGATCCACTGAAGAAGATACCCTCGACA 14538
>seq66
Length=218528
Score = 93.3 bits (102), Expect = 9e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 280717 GCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACC 280776
||||||| || || ||||||||||||||| | ||||||| | ||| ||||| | |||
Sbjct 83056 GCGGTCTCTCCGGTGGCCAGAAGGTCAAAGTCGTCATCGCCGGCGCTATGTGGAACAACC 82997
Query 280777 CTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
| || || |||| || |||||||||||||||| ||||||||||
Sbjct 82996 CGCATCTGCTCGTCCTTGACGAGCCTACCAACTTCTTGGACCGCGA 82951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027821866173694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |