Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq135 114 3e-20 seq95 107 4e-18 seq66 93.3 9e-14 >seq135 Length=84039 Score = 114 bits (126), Expect = 3e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| |||||| || || || |||| ||||| ||||| ||| Sbjct 47964 GGCGAGGACCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCTAAGATCCTGCTCAAC 48023 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | | ||||||||| | || || ||||| |||| || || || | Sbjct 48024 CAGACTCACCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTTCTCGGCCCTAACGGTTCC 48083 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||||||||| |||| ||||| | ||| ||||| | ||| Sbjct 48084 GGCAAGACCACCCTCATGCGCGCCATCAACAACGAGCAGCTCG-AGGGTTTCCCCAAGCA 48142 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||||| | ||| || || || ||||||||| | ||||| Sbjct 48143 GTCTGAGGTCAAGACCGTCTACGTCGAGCACGACCTGGACTC 48184 Score = 93.3 bits (102), Expect = 9e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | | | | ||| Sbjct 48324 TCCCTCTCAGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGTCTTTGAG-GAGCC 48382 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| |||| |||||||||||||| ||||||||||||||| || ||||| || ||||| Sbjct 48383 TGATATCCTCCTGCTTGATGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 48442 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 49368 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCTTGC 49427 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | |||||| ||||||| |||||||||||||||||||| || ||||| || Sbjct 49428 TC-GTGGCAGCGTCCTCACTTGATCGTCCTCGACGAGCCTACCAACTACCTTGACCGTGA 49486 Query 280823 GAGCCTGGGCGCTCTG 280838 || || |||||| Sbjct 49487 CTCTCTCGGTGCTCTG 49502 >seq95 Length=147769 Score = 107 bits (118), Expect = 4e-18 Identities = 275/409 (67%), Gaps = 20/409 (5%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 14140 TCGAAGAAGTTGGTCTTGCCGTTAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 14199 Query 251623 GCATTGT---ACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 | |||| ||| |||| | ||| ||||| || | | ||||||||| || ||||| Sbjct 14200 GAGTTGTAGAACTTCTTG---TTGCCCAGTGCCACCAGCAGGCGGTCTGCGACGAACTCA 14256 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACA 251738 | ||||| | ||| || | | ||||||||| | | | |||| |||| || || Sbjct 14257 ATGTACTGGCGCATAAGATTGGCGTTCATGCCGAGGAGAGCGAC-GGGAAGGGCATCCGT 14315 Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC--CTGTGCCAGA 251796 || ||| ||||| ||| | | || ||||| | || |||| | | | | | Sbjct 14316 GAGGAACTCCTTCTCGATATCTACGGCCTCGGTGATGAT---CTTCTCGACGGCATCGGG 14372 Query 251797 G-ACAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGG--TGCAGACC 251852 | |||| || | | ||| |||| | || || || || || |||| ||| Sbjct 14373 GCTGGGCTTCGACTTGATGTGCGAGAACAGCAGGCAAGCGAA---GTCGGTATGCATACC 14429 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| ||| ||||| |||||| || | | || || ||||| | ||||| ||| | Sbjct 14430 CTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTGAGACCGGGCATGAGGCCACGCTTCTT 14489 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||||||||||| | ||||||||| ||| | | |||||||||| Sbjct 14490 CAGCCAGAAGATGGAAGCGAAGGATCCACTGAAGAAGATACCCTCGACA 14538 >seq66 Length=218528 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 280717 GCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACC 280776 ||||||| || || ||||||||||||||| | ||||||| | ||| ||||| | ||| Sbjct 83056 GCGGTCTCTCCGGTGGCCAGAAGGTCAAAGTCGTCATCGCCGGCGCTATGTGGAACAACC 82997 Query 280777 CTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 | || || |||| || |||||||||||||||| |||||||||| Sbjct 82996 CGCATCTGCTCGTCCTTGACGAGCCTACCAACTTCTTGGACCGCGA 82951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027821866173694