Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq125 167 4e-36 seq63 143 5e-29 seq135 111 3e-19 seq66 98.7 2e-15 seq95 86.0 1e-11 >seq125 Length=94255 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| |||||||| || |||||||| || |||||||| || || ||| Sbjct 36385 CCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 36326 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 36325 AGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 36266 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| ||| |||||||| || | ||||| || Sbjct 36265 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACC 36206 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 36205 TCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| ||||| ||||| || ||||| Sbjct 36613 CCACCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGAC 36554 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| ||||| | || ||||| || ||| Sbjct 36553 AGCGTACGACCGTCTTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 36494 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | ||| ||| |||||||| || | ||||| || Sbjct 36493 ATACCCTCCTTATCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACC 36434 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| ||||||||||||||||| |||||||| Sbjct 36433 TCGAGCGTGATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 36387 Score = 145 bits (160), Expect = 1e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | || || || ||||| || |||||||| ||||| || Sbjct 35874 CCACCGCGCAGGCGGAGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 35815 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| |||||||| |||||||| || || | || ||||| || ||| Sbjct 35814 AGGGTGCGGCCATCTTCCAACTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGGGGA 35755 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||| |||||||| || | || || || Sbjct 35754 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCGACC 35695 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 35694 TCAAGGGTGATGGTCTTGCCGGTGA 35670 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || ||| ||| || |||||||| || ||||| Sbjct 36157 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 36098 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || ||||| || || Sbjct 36097 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 36038 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | |||||| ||||||||||| | || || || Sbjct 36037 ATGCCCTCCTTATCCTGGATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCGACC 35978 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 35977 TCGAGGGTGATGGTCTTGCCAGT 35955 >seq63 Length=225829 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| |||||||| || Sbjct 138089 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138030 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| || ||||| |||||| ||| Sbjct 138029 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 137970 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||||||||| Sbjct 137969 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 137911 >seq135 Length=84039 Score = 111 bits (122), Expect = 3e-19 Identities = 321/489 (66%), Gaps = 9/489 (2%) Strand=Plus/Minus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || ||||| |||||||||||||||| || || || || || || ||||| || Sbjct 48443 GAGCCAAGCAACGTTCTTGACGTCCATGTGGTTGGTGGGCTCATCAAGCAGGAGGATATC 48384 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || | || ||| || | |||| ||||||||| ||||| || || || ||||| Sbjct 48383 AGGCTCCTCAAAGACGGCACGGGCAAGAGCCAGCTTCATCTTCCAACCACCTGAGAGGGA 48324 Query 225634 GCCGATTGAA-ACA-GAG-TGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGAT 225690 | ||| | | || ||| |||| | || |||||| ||||| |||| | | Sbjct 48323 GGTGATGGGAGACTCGAGCTGCTCACGGACG---AAGCCGAACTCCTCGAGCTTGTCCTC 48267 Query 225691 AATGCGCTCGGGAGA---GCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATA 225747 || || |||| | || | | ||| | | | | | | | || Sbjct 48266 AACCTCCTTCTGAGACTTGGTGACACCAGCAGTCTCGAGCTTCTTCATGGTCCAGCCAAT 48207 Query 225748 TACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 |||||| || | | | | | ||| | |||||| || ||||| || ||| || || Sbjct 48206 GACGGTCTGCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCGACGTAGACGGTCTTGACCTC 48147 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 ||| | |||||| ||||| ||||| | || || || || | ||||| |||| Sbjct 48146 AGACTGCTTGGGGAAACCCTCGAGCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGTCTT 48087 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 ||| | ||||| || |||| || ||||| | | || ||||| | | ||| | || Sbjct 48086 GCCGGAACCGTTAGGGCCGAGAAGACCGTAGCGCTGGCCACGCTTCAGGCGCAGGTGAGT 48027 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 ||| || |||||||| |||| ||||| |||||||| ||| | |||||||||||| Sbjct 48026 CTGGTTGAGCAGGATCTTAGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGGTCCTC 47967 Query 225988 ACCCTCCTC 225996 |||||||| Sbjct 47966 GCCCTCCTC 47958 >seq66 Length=218528 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| |||||||| | |||||||||||| ||| | |||| ||| |||| | || | Sbjct 83483 GGCATAACGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCATGTGCATCTCGACGTGCTC 83542 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | || ||||| | ||| | || |||| |||||| |||||| || ||| Sbjct 83543 AAGCGCGTGCTGCTTGATGTAACCAATACGCAGGTTGGGGTGCTTCTCAACCTTGCC--- 83599 Query 225094 AGTCGGTTG--TG-CCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATT 225150 ||| | | || ||||||| || | ||||||||||||||||| |||||| ||||| || Sbjct 83600 AGTTTGCGGGATGACCTCGCCCGTCAAGACCTTGATGAGCGTAGACTTGCCAGCACCGTT 83659 Query 225151 GGGGCCAAT 225159 || |||||| Sbjct 83660 GGCGCCAAT 83668 >seq95 Length=147769 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| | || |||||||| | | || ||||| |||||| ||| ||||||| Sbjct 14845 AGGTTCTCGTTGACGATGCCATCAGAGGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAG 14904 Query 10683 TGGCGCTCATCATCGTTCAG----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTG 10738 ||||||||| ||||| || || ||| ||||| | |||| | ||| | Sbjct 14905 AAGCGCTCATCGTCGTTGAGACGCTTGTTC----CAGTCGTGAAGGTCCTTGGAGAGATC 14960 Query 10739 GACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 || |||||| | |||||||||| ||| | ||||||||||||||||| Sbjct 14961 GATCTCCTCAGCCGTCCAGAAAGAGGCTTCAGCCTTCTTGTACATCTG 15008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921609336002480