Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq125 141 2e-28
seq63 86.0 1e-11
>seq125
Length=94255
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | ||| ||||| ||||| || | || || || ||||||
Sbjct 36349 TCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAG 36290
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || ||||| || || || |||||||| |||| ||||||||
Sbjct 36289 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTA 36230
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||||| || ||||||||||| ||||| || || ||||||||||||
Sbjct 36229 TCGATGGTATCCGAAGATTCCACCTCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACG 36170
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 36169 AAGATCTGCAT 36159
Score = 140 bits (154), Expect = 8e-28
Identities = 148/194 (76%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || ||||||| ||||| || |||||||| | || || || ||||||
Sbjct 36577 TCCTTTTGAATGTTGTAGTCGGACAGCGTACGACCGTCTTCCAGCTGCTTACCGGCGAAG 36518
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| || || ||| || || || ||||||||||| |||| ||||||
Sbjct 36517 ATGAGACGCTGCTGG---TCCGGGGGAATACCCTCCTTATCCTGGATCTTCGACTTCACG 36461
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct 36460 TTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGATAGTCTTTCCAGTGAGGGTCTTG 36401
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 36400 ACGAAGATCTGCAT 36387
Score = 104 bits (114), Expect = 6e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| || | ||||| || || ||||| || |||||||
Sbjct 36157 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 36098
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || |||||||||| ||||| || |||
Sbjct 36097 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 36038
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| |||| || || || || || | || ||| || ||
Sbjct 36037 ATGCCCTCCTTATCCTGGATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCGACC 35978
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451
||||| ||||| ||||| || ||||
Sbjct 35977 TCGAGGGTGATGGTCTTGCCAGTCA 35953
>seq63
Length=225829
Score = 86.0 bits (94), Expect = 1e-11
Identities = 131/183 (72%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || ||||| || || || | || || || |||||||||
Sbjct 138089 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138030
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
|| ||||| || || ||| || || || || |||||||| || ||| || || ||
Sbjct 138029 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATT 137974
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || || || || ||||| ||||| ||||| || || || ||||||||
Sbjct 137973 GTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 137914
Query 288462 GAA 288464
|||
Sbjct 137913 GAA 137911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179637260358852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |