Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq12 255 6e-63 >seq12 Length=708323 Score = 255 bits (282), Expect = 6e-63 Identities = 967/1491 (65%), Gaps = 56/1491 (4%) Strand=Plus/Plus Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962 || |||||||| || || || ||| ||| || |||| || ||||| || ||| | || Sbjct 538633 CTCTTCAACGCCGGTACTCCCAAGCCTCAGCTGGCTTCCTGCTTCCTCATCGAC-ATGAA 538691 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || ||| ||| || || | ||| | ||| ||| ||| || | || || || Sbjct 538692 GGAGGACAGCATTGAGGGTATCTACGATACCCTGAAGACCTGCGCCATGATTTCCAAGAC 538751 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTACATCCGC 94080 ||| || || ||||| ||| ||||||| |||| || || | || ||| || Sbjct 538752 CGCCGGTGGTATCGGCCTCAATGTCCAC--CGTATTCGCGCTACTGGCAGCTATATTGCT 538809 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || ||||| || ||| |||||||||| | ||||||||||| || | ||||||| | || Sbjct 538810 GGCACCAACGGTACCAGCAACGGCCTCATTCCTATGCTCCGTGTGTACAACAACACCGCC 538869 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 ||||| || ||||||||||| | | | ||| | ||||| | || |||||||| Sbjct 538870 CGCTATGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCATTCGCCATTTACCTCGAGCCG 538929 Query 94201 TGGCACGCGGACGTG--CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGG 94258 ||||| || || || ||| ||| | ||||| || ||||||||||| || || || Sbjct 538930 TGGCATGCCGATGTCTTCAGC--TTCCTTGACCTCCGCAAGAACCACGGAAAGGAAGAGG 538987 Query 94259 AGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCG 94318 | || | ||||| || |||||||| ||| | || || || || ||||| || |||| Sbjct 538988 TTCGCGCTCGTGACCTGTTTTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCG 539047 Query 94319 AGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTT 94378 | | ||| | |||||| ||| | || ||||| || || || || || ||||||| | Sbjct 539048 AACAGAACGGCACCTGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCT 539107 Query 94379 GTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAA 94436 || || || || || || |||| | | ||||| | |||| || | | Sbjct 539108 ACGG--CGACGAGTTCGAGGCTCTGTACGAGCAGTACGAGAAGGAGGGTCGGGGTCGTGA 539165 Query 94437 GGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTAC 94496 | | ||| |||||| ||| | || | || | ||||| ||||| || | Sbjct 539166 GACCGTTCGTGCCCAGAAGCTCTGGTACGCCATTCTTGAGGCTCAGGTCGAGACTGGCAA 539225 Query 94497 GCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGG 94555 |||| ||| ||| |||||| | ||| |||| |||| ||||||| || |||| || Sbjct 539226 CCCCTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACCTTGGCA 539284 Query 94556 TGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTG 94615 ||| ||||| || || ||| ||||||||||||||| ||| | || || ||| | | Sbjct 539285 CCATCCGCAGCTCCAACCTCTGCTGCGAGATTGTCGAGTACACTGCCCCTGATGAGGTCG 539344 Query 94616 CTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA-CA---CG 94671 |||| || ||||| | ||| | || | || || || ||| | | || | Sbjct 539345 CTGTCTGCAACCTTGCATCCCTGGCACTTCCTACCTTTGT---CAATGTCGAGCAGGGAG 539401 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAAC 94731 | || |||| || ||||| | || | | | | ||| |||| Sbjct 539402 TTTATGACTTC----------AAGAAGCTTCATGATGTCACTCAAGTGCTCGTCAAGAAC 539451 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGC--GGAGAACTCAAACC 94789 ||||||| | | ||||||| ||| ||||||||| |||||||| |||| | ||| Sbjct 539452 CTGAACAAGATCATCGACATCAACCACTACCCCGTGCCGGAGGCTAGGAGGA--GCAACA 539509 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || ||||| ||||| | | || ||| | ||| |||| || || | || | | Sbjct 539510 TGCGCCATCGCCCCATTGCTGTTGGTGTCAACGGTCTCGCCGATGCTTTCCTGGCTCTTC 539569 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 || |||||| ||| ||| || || | | || | | || ||||| | ||| | Sbjct 539570 GTATGCCCTTCGATTCTCCTGAGGCCAAGCACCTCAACATTCAGATCTTCGAGACCATCT 539629 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAAT 94969 | ||| || | | ||| | | | |||| | | ||| || | || Sbjct 539630 ACCACGCTGCTCTTACTGCCTCCATTGAGCTCGCCA---AGCAACACGGCCCCTATGAGA 539686 Query 94970 CGTTCC-GCGGATCGCC-CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 |||||| | | | | || ||| || |||||| | |||| ||| | ||| | Sbjct 539687 CGTTCCAGGGTAGCCCCGCTT--CCCAAGGCATTCTGCAGTATGACATGTGGAACAAGGC 539744 Query 95028 GCCCTCGGGTCTGTACGACTGGGA-AGCTCTACGCGCTGATGTTATCAAACACGGTGTGA 95086 ||| | | |||| |||||||| ||| || ||||| || | | |||||||| Sbjct 539745 CCCCACTGACCTGTGGGACTGGGACAGC-CTGAAGGCTGAGGTCGCCCAGCACGGTGTCC 539803 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| | ||||| || || |||||||| || ||||| || ||||| |||||| || Sbjct 539804 GCAACTCCCTGCTCGTTGCGCCCATGCCTACTGCCTCTACCAGTCAGATTCTTGGCTTCA 539863 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 |||||| ||||| || | ||| || ||| | ||| | || || | ||||| || | Sbjct 539864 ACGAGTGCTTCGAGCCTTACACTTCGAACATTTACTCTCGCCGTGTCTTGGCCGGTGAGT 539923 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGAC 95265 ||| ||| ||||| ||||| |||||| | || | || ||| ||||| ||| Sbjct 539924 TCCAGGTCGTCAACCCCTGGCTCCTGAAGGACCTGGTCGAC-CTCGGTCTGTGGTCGGAC 539982 Query 95266 AAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAAT 95321 || | ||||||| | |||| ||||||||||| ||||| | || || | || Sbjct 539983 CAGATGAAGAACCGCATCATTGCT----TCCAACGGCTCCATCCAGCAAATTCCCAACAT 540038 Query 95322 ACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 ||||| |||||||||||||||||||||||||| |||||| || | ||||| Sbjct 540039 CCCGGATGACATCAAGGCGCTCTACAAGACCGTCTGGGAGCTCTCTCAGCG 540089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716187298640