Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 154 1e-32 seq95 136 4e-27 seq125 111 2e-19 >seq12 Length=708323 Score = 154 bits (170), Expect = 1e-32 Identities = 798/1256 (64%), Gaps = 23/1256 (2%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || ||||| || || | | || | || |||| ||| Sbjct 539938 GGTTGACGACCTGGAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTCGAAGTGTAAG 539879 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||| || || ||| || | || || |||||| ||| | Sbjct 539878 GCTCGAAGCACTCGTTGAAGCCAAGAATCTGACTGGTAGAGGCAGTAGGCATGGGCGCAA 539819 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTG--CCAAT 153204 | | || || || || | |||||| | ||| || |||||| | ||| ||| | Sbjct 539818 CGAGCAGGGAGTTGCGGACACCGTGCTGGGCGACC-TCAGCCTTCA--GGCTGTCCCAGT 539762 Query 153205 CCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGG 153264 ||||||| | | || | | |||||||||||| ||||| | | ||| | |||| Sbjct 539761 CCCACAGGTCAGTGGGGGCCTTGTTCCACATGTCATACTGCAGAATGCCTTGGGAAGCGG 539702 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324 | || || ||||| ||| ||||| | | ||| || || | || | Sbjct 539701 GGCTACCCTGGAACGTCTCATAGGGGCCGTGTTGCTTGGCGAGCTCAATGGAGGCAGTAA 539642 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || | | ||| ||||| ||| ||| || | ||||| || || | Sbjct 539641 GAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGGTGCTTGGCCTCAGGAGAAT 539582 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | ||||| || || || || || ||||| ||||| | || ||| || | |||| Sbjct 539581 CGAAGGGCATACGAAGAGCCAGGAAAGCATCGGCGAGACCGTTGACACCAACAGCAATGG 539522 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504 | ||||| | |||||| | ||| || || | ||| ||||| ||| ||||| | Sbjct 539521 GGCGATGGCGCATGTTGCTCCTCCTAGCCTCCGGCACGGGGTAGTGGTTGATGTCGATGA 539462 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | ||||| ||||| || | ||||| ||| | | | ||| |||| ||| ||||| Sbjct 539461 TCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCATGAAGCTTCTTGAAGTCATAAA 539402 Query 153565 -TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCC 153623 || | | ||||| || | | | || | || || || || ||||| || Sbjct 539401 CTCCCTGC-TCGACATTGACAAAGGTAGGAAGTGCCAGGGATGCAAGGTTGCAGACAGCG 539343 Query 153624 GTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683 ||| || | | | |||||| || |||||| |||||||||| || ||| | Sbjct 539342 ACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAGAGGTTGGAGCTGCGGATGGTG 539283 Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 || | || | ||| ||||| ||||| ||||| ||| ||| | |||||| | || | Sbjct 539282 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTG 539223 Query 153744 CCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGCACCCGCTG 153802 || |||||||| || | || | || | || || | ||| || || || || Sbjct 539222 CCAGTCTCGACCTGAGCCTCAAGAATGG-CGTACCAGAGCTTCTGGGCACGAACGGTCTC 539164 Query 153803 CCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCA 153862 ||| || ||||| ||||||| |||||||||| ||| ||||||||||||||| Sbjct 539163 ACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAGCCTCGAACTCGTCGCCGTAGAC 539104 Query 153863 GTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGAC 153922 |||||| || || || |||| | || |||||||| | ||| | ||| | ||| Sbjct 539103 GTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTCCAGGTGCCGTTCTGTTCGAC 539044 Query 153923 GCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATC 153982 || |||||| ||||| || | ||| || ||||| | ||||| || || || | | Sbjct 539043 ACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAACAGGTCACGAGC---GCGAAC 538987 Query 153983 CTC--CGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTGCCAGG 154038 ||| | || || | | || | || | || | ||| ||| ||||| ||||| | Sbjct 538986 CTCTTCCTTTCCGTGGTTC-TTGCGGAGGTCAAGGAAGCTGAAGACATCGGCATGCCACG 538928 Query 154039 GTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCA 154095 | || | ||| | ||| | ||||| |||| || || ||||| ||||| | ||| Sbjct 538927 GCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAGCGGG 538868 Query 154096 CCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGCCGTTGGTCGAA 154154 | | |||||| | || || | ||| || |||||| |||| ||| |||||||| | Sbjct 538867 CGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCG-TTGCTGGTACCGTTGGTGCCA 538809 Query 154155 TTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTAC 154214 || | |||||| ||||| | | || || || | ||| || || ||| || | Sbjct 538808 GCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTGAGGCCGATACCACCGGCGGTC 538749 Query 154215 TTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 || || || |||||| ||| || |||||| || || ||||| || || Sbjct 538748 TTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCTCAATGCTGTCCTC 538693 >seq95 Length=147769 Score = 136 bits (150), Expect = 4e-27 Identities = 169/226 (75%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 ||||| || | |||||| |||||||| | |||| || || || |||| || || ||| Sbjct 14345 GAGGCCGTAGATATCGAGAAGGAGTTCCTCACGGATGCCCTTCCCGTCGCTCTCCTCGGC 14286 Query 52674 ATGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 |||||||| || || ||| || ||||||| ||||| || || || || ||| ||||| Sbjct 14285 ATGAACGC-CAATCTTATGCGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTGGTGGC 14227 Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 || ||||| | | |||| || |||| | ||| || || || || ||| | ||||| | Sbjct 14226 ACT-GGGCAACAAGAAGTTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCT 14168 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| | |||||||||||||| ||||||||||| || || || || Sbjct 14167 CGCTTAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 14122 >seq125 Length=94255 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| || ||||| ||| || || || ||||||| Sbjct 36580 GACTCCTTTTGAATGTTGTAGTCGGACAGCGTACGACCGTCTTCCAGCTGCTTACCGGCG 36521 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || ||||| || || || ||| || || | Sbjct 36520 AAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGACTTCACG 36461 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | || |||||||||| ||| | || || ||||| || || || Sbjct 36460 TTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGATAGTCTTTCCAGTGAGGGTCTTG 36401 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 36400 ACGAAGATCTGCAT 36387 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||| || ||||||||||| Sbjct 36385 CCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 36326 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || ||||||| |||| |||||||| |||||||| || Sbjct 36325 AGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 36266 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||| || | || |||||| Sbjct 36265 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACC 36206 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || ||||| ||||| || || || |||||||| Sbjct 36205 TCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255365480480