Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq125 104 2e-17 seq95 102 8e-17 seq63 93.3 4e-14 >seq125 Length=94255 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| || ||||| || || ||||| || |||||| | Sbjct 36122 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 36063 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 |||||| |||||||| || ||||| ||||||||||| ||| ||| ||| ||||| | Sbjct 36062 GATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTGACATT 36003 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| |||||| | |||||| |||| ||| | || ||||| |||| Sbjct 36002 GTCGATGGTGTCAGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 35953 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || || || ||||| || Sbjct 36385 CCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 36326 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 36325 AGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 36266 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | |||| ||| |||| | || || Sbjct 36265 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACC 36206 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || || || || ||||| || || || |||||||| Sbjct 36205 TCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 >seq95 Length=147769 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| ||||| | || |||| |||||| || | || || || |||| || | | | Sbjct 14347 CCGAGGCCGTAGATATCGAGAAGGAGTTCCTCACGGATGCCCTTCCCGTCGCTCTCCTCG 14288 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | |||||||| | | ||| | ||||||| || || ||||| ||||||||||| || Sbjct 14287 GCATGAACGCCAATCTTATGCGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTGGTGG 14228 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | ||| | ||| || || || || ||||| || ||| | ||||| | Sbjct 14227 CACTGGGCAACAAGAAGTTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCT 14168 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| | |||||||||||||| |||||||||||||| || || || Sbjct 14167 CGCTTAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 14122 >seq63 Length=225829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 138089 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138030 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 138029 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 137970 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||| | |||||| |||| ||| | || ||||| || || || || || || Sbjct 137969 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 137911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494059776160