Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq12 143 3e-29
seq95 96.9 4e-15
seq3 95.1 1e-14
>seq12
Length=708323
Score = 143 bits (158), Expect = 3e-29
Identities = 683/1074 (64%), Gaps = 25/1074 (2%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGA 115961
|| ||||| | ||||| ||||| |||||||| ||| | |||||| | | ||| | ||
Sbjct 539897 TAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTAGA 539839
Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021
||| || |||||||| || | ||| ||| |||||||| ||| | | |
Sbjct 539838 GGCAGTAGGCATGGGCGCAACGAGCAGGGAGTTGCGGACACCGTGCTGGGCGACCTCAGC 539779
Query 116022 CTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079
||| ||| ||||||||| | | | || | | || | |||||| ||| ||||
Sbjct 539778 CTTCAGGCTGTCCCAGTCCCACAGGTCAG--TGGGGGCCTTGTTCCACATGTCATACTGC 539721
Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139
|| || |||||||| || || |||| || |||||||| ||||| | || ||
Sbjct 539720 AGAATGCCTTGGGAAGCGGGGCTACCCTGGAACGTCTCATAGGGGCCGTGTTGCTTGGCG 539661
Query 116140 AATTC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196
| || |||| || || || ||||| || || ||||| || || || ||
Sbjct 539660 AGCTCAATGGAG---GCAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTG 539604
Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256
| ||||||||| ||||| || | | ||| | || |||| ||||||
Sbjct 539603 AGGTGCTTGGCCTCAGGAGAATCGAAGGGCATACGAAGAGCCAGGAAAGCATCGGCGAGA 539544
Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316
|| | |||||| | |||| |||||||| | ||| || | | | ||| | ||||
Sbjct 539543 CCGTTGACACCAACAGCAATGGGGCGATGGCGCATGTTGCTCCTCCTAGCCTCCGGCACG 539484
Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376
|| || || | ||||| | | | || || || ||| || || | |||| |||
Sbjct 539483 GGGTAGTGGTTGATGTCGATGATCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCA 539424
Query 116377 TGAAGCTTTTCGTAATCA-AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435
|||||||| | | | ||| ||||| | | ||| |||||||| | ||||||| || |
Sbjct 539423 TGAAGCTTCTTGAAGTCATAAACTCCCTG-CTCGACATTGACAAAGGTAGGAAGTGCCAG 539365
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| || || || || |||| | |||||| |||||||||| | ||| || ||
Sbjct 539364 GGATGCAAGGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCA 539305
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555
| || || || |||||||| | |||||| || || ||| ||| || ||
Sbjct 539304 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 539245
Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614
|||||| ||||| | || | || ||||| || | || ||||| || | ||| |
Sbjct 539244 CTTGTACAGCATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAG 539185
Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674
| || | ||| | || || | | || ||||||| |||||||| ||| || |
Sbjct 539184 CTTCTG-GGCACGAACGGTCTCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAG 539126
Query 116675 CCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734
|||| ||||| || || | || | || || || || | || || | ||||
Sbjct 539125 CCTCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAG 539066
Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794
||| || || || || |||||||||||||| || |||||||| || || | |
Sbjct 539065 TCCAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAA 539006
Query 116795 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 116854
| || || ||| |||| | ||||| | || || || || | || | ||| |
Sbjct 539005 ACAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGA 538946
Query 116855 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------AC 116908
|| ||| || |||||||| || ||||| | |||| || || | |||| |
Sbjct 538945 AGACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACC---GGGACGCTTGTTGC 538889
Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962
|| |||||| ||||| | || || ||| | || || ||||| |||||||
Sbjct 538888 CACCCTGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGA 538835
>seq95
Length=147769
Score = 96.9 bits (106), Expect = 4e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 127537 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 127596
|||||||||||| |||||||| || || ||||| ||||| |||||||| || |||||
Sbjct 14427 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTGAGACCGGGCATGAGGCCACGCTT 14486
Query 127597 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 127656
||||| |||||| || | | || || ||| ||||||||| ||||| ||| ||| ||
Sbjct 14487 CTTCAGCCAGAAGATGGAAGCGAAGGATCCACTGAAGAAGATACCCTCGACAGCCGCAAA 14546
Query 127657 CGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACT 127715
|| | || ||| || || | || | |||| || | ||| || ||||| |
Sbjct 14547 AGCGATCAGGCGCGATGCGAAAG-TCGAGTTCTTGTCGCAGATCCAGCGCAGGGCCCAGT 14605
Query 127716 GTGCCTTTTTCTCGATACATGGGAC 127740
||||| |||| |||||| || ||
Sbjct 14606 CGGCCTTCTTCTTGATACAAGGAAC 14630
>seq3
Length=900425
Score = 95.1 bits (104), Expect = 1e-14
Identities = 219/322 (68%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931
||| |||| ||||| ||||| |||||||| | ||| || || | | | || ||
Sbjct 850780 CTTGCCGATAGCGTCGATTTCATCAATGAAGATGATGCAGGGGGTACTCTTCCGCGCTGT 850839
Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991
| |||| | |||||| ||||| || ||| ||||| || ||||||||||| || | ||
Sbjct 850840 TGCAAACAAATCTCGTACTCTGGAGGGACCAACACCGACGAACATCTCCACGAACTCGGA 850899
Query 12992 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050
| || ||| | || |||||| || | ||||||||| || |||| || || || |
Sbjct 850900 GCCGCTAACGCT-GAAGAAGGGCACCTGGGATTCACCGGCAGTGGCCTTAGCAAGCAGCG 850958
Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTT 13109
|||| || || || || || | ||| | ||| ||||| || || ||||||| | ||
Sbjct 850959 TCTTGCCAGTACCAGGAGGACCAGAGAGGATGGCGCCACGAGGAATTTTGGCACCAAGTT 851018
Query 13110 CCAAAGTAGCGCT-CGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGC 13168
| | || | || | |||| || || ||| |||| ||| | ||| | ||||||
Sbjct 851019 TCTGA-TA-CACTCCAGGTTCCTTGAGGAAGCTGACGAATTCCATGATTTCTTGCTTCGC 851076
Query 13169 GGCGTCGATGCCTTCAACGTCA 13190
|||| || || ||||||||
Sbjct 851077 CTCGTCCATCCCGGCAACGTCA 851098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613498503535440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |