Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12 143 3e-29 seq95 96.9 4e-15 seq3 95.1 1e-14 >seq12 Length=708323 Score = 143 bits (158), Expect = 3e-29 Identities = 683/1074 (64%), Gaps = 25/1074 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGA 115961 || ||||| | ||||| ||||| |||||||| ||| | |||||| | | ||| | || Sbjct 539897 TAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTAGA 539839 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 ||| || |||||||| || | ||| ||| |||||||| ||| | | | Sbjct 539838 GGCAGTAGGCATGGGCGCAACGAGCAGGGAGTTGCGGACACCGTGCTGGGCGACCTCAGC 539779 Query 116022 CTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 ||| ||| ||||||||| | | | || | | || | |||||| ||| |||| Sbjct 539778 CTTCAGGCTGTCCCAGTCCCACAGGTCAG--TGGGGGCCTTGTTCCACATGTCATACTGC 539721 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 || || |||||||| || || |||| || |||||||| ||||| | || || Sbjct 539720 AGAATGCCTTGGGAAGCGGGGCTACCCTGGAACGTCTCATAGGGGCCGTGTTGCTTGGCG 539661 Query 116140 AATTC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 | || |||| || || || ||||| || || ||||| || || || || Sbjct 539660 AGCTCAATGGAG---GCAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTG 539604 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256 | ||||||||| ||||| || | | ||| | || |||| |||||| Sbjct 539603 AGGTGCTTGGCCTCAGGAGAATCGAAGGGCATACGAAGAGCCAGGAAAGCATCGGCGAGA 539544 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 || | |||||| | |||| |||||||| | ||| || | | | ||| | |||| Sbjct 539543 CCGTTGACACCAACAGCAATGGGGCGATGGCGCATGTTGCTCCTCCTAGCCTCCGGCACG 539484 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || || | ||||| | | | || || || ||| || || | |||| ||| Sbjct 539483 GGGTAGTGGTTGATGTCGATGATCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCA 539424 Query 116377 TGAAGCTTTTCGTAATCA-AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 |||||||| | | | ||| ||||| | | ||| |||||||| | ||||||| || | Sbjct 539423 TGAAGCTTCTTGAAGTCATAAACTCCCTG-CTCGACATTGACAAAGGTAGGAAGTGCCAG 539365 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || || || || || |||| | |||||| |||||||||| | ||| || || Sbjct 539364 GGATGCAAGGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCA 539305 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 | || || || |||||||| | |||||| || || ||| ||| || || Sbjct 539304 GAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTC 539245 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614 |||||| ||||| | || | || ||||| || | || ||||| || | ||| | Sbjct 539244 CTTGTACAGCATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAG 539185 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | || | ||| | || || | | || ||||||| |||||||| ||| || | Sbjct 539184 CTTCTG-GGCACGAACGGTCTCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAG 539126 Query 116675 CCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 |||| ||||| || || | || | || || || || | || || | |||| Sbjct 539125 CCTCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAG 539066 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794 ||| || || || || |||||||||||||| || |||||||| || || | | Sbjct 539065 TCCAGGTGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAA 539006 Query 116795 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 116854 | || || ||| |||| | ||||| | || || || || | || | ||| | Sbjct 539005 ACAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGA 538946 Query 116855 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------AC 116908 || ||| || |||||||| || ||||| | |||| || || | |||| | Sbjct 538945 AGACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACC---GGGACGCTTGTTGC 538889 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 || |||||| ||||| | || || ||| | || || ||||| ||||||| Sbjct 538888 CACCCTGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGA 538835 >seq95 Length=147769 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 127537 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 127596 |||||||||||| |||||||| || || ||||| ||||| |||||||| || ||||| Sbjct 14427 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTGAGACCGGGCATGAGGCCACGCTT 14486 Query 127597 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 127656 ||||| |||||| || | | || || ||| ||||||||| ||||| ||| ||| || Sbjct 14487 CTTCAGCCAGAAGATGGAAGCGAAGGATCCACTGAAGAAGATACCCTCGACAGCCGCAAA 14546 Query 127657 CGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACT 127715 || | || ||| || || | || | |||| || | ||| || ||||| | Sbjct 14547 AGCGATCAGGCGCGATGCGAAAG-TCGAGTTCTTGTCGCAGATCCAGCGCAGGGCCCAGT 14605 Query 127716 GTGCCTTTTTCTCGATACATGGGAC 127740 ||||| |||| |||||| || || Sbjct 14606 CGGCCTTCTTCTTGATACAAGGAAC 14630 >seq3 Length=900425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 219/322 (68%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 ||| |||| ||||| ||||| |||||||| | ||| || || | | | || || Sbjct 850780 CTTGCCGATAGCGTCGATTTCATCAATGAAGATGATGCAGGGGGTACTCTTCCGCGCTGT 850839 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 | |||| | |||||| ||||| || ||| ||||| || ||||||||||| || | || Sbjct 850840 TGCAAACAAATCTCGTACTCTGGAGGGACCAACACCGACGAACATCTCCACGAACTCGGA 850899 Query 12992 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 | || ||| | || |||||| || | ||||||||| || |||| || || || | Sbjct 850900 GCCGCTAACGCT-GAAGAAGGGCACCTGGGATTCACCGGCAGTGGCCTTAGCAAGCAGCG 850958 Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTT 13109 |||| || || || || || | ||| | ||| ||||| || || ||||||| | || Sbjct 850959 TCTTGCCAGTACCAGGAGGACCAGAGAGGATGGCGCCACGAGGAATTTTGGCACCAAGTT 851018 Query 13110 CCAAAGTAGCGCT-CGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGC 13168 | | || | || | |||| || || ||| |||| ||| | ||| | |||||| Sbjct 851019 TCTGA-TA-CACTCCAGGTTCCTTGAGGAAGCTGACGAATTCCATGATTTCTTGCTTCGC 851076 Query 13169 GGCGTCGATGCCTTCAACGTCA 13190 |||| || || |||||||| Sbjct 851077 CTCGTCCATCCCGGCAACGTCA 851098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498503535440