Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12 138 2e-27 >seq12 Length=708323 Score = 138 bits (152), Expect = 2e-27 Identities = 407/614 (66%), Gaps = 10/614 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 || ||| || |||||||| |||| | || |||||| | | | | ||||||||||||| Sbjct 540285 CTGGTCGACAGTGAACTGGATGG-GAGCAGCGGCAGCCTGGGTACGGAGATAGTACATGC 540227 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || || || ||| ||| | ||||||||| | | |||| || | | Sbjct 540226 CAGTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGGAGGTGATCTTGCCCATCGTAG 540167 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || |||||||||||| || ||||| || |||||| ||||| || || || || Sbjct 540166 GATCCTTCATGTGAATGTTGAGGGACTGCGACTGATCGATG-AAGGCACCACGGTCAGCA 540108 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075 ||||| | || ||||| ||| || | |||||| || |||||| | | || || || | Sbjct 540107 GCCATCTGGACGATGGTACGCTGAGAGAGCTCCCAGACGGTCTTGTAGAGCGCCT-TGAT 540049 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || | || | | | | | || ||| ||||||||| || || | | || Sbjct 540048 GTCATCCGGGATGT-TGGGAATTTGCTGGATGGAGCCGTTGGAAGCAATGATGCGGTTCT 539990 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || ||| ||| ||||| || | || ||| ||| || || |||||||| || Sbjct 539989 TCATCTGGTCCGACCACAGACCGAGGTCGACCAGGTCCTTCAGGAGCCAGGGGTTGACGA 539930 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || |||| || || | || | | | | ||| ||| | || ||||| Sbjct 539929 CCTGGAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTCGAAGTGTAAGGCTCGAAGC 539870 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||| ||| | ||||||| ||| ||| || |||||||| || | |||||||| Sbjct 539869 ACTCGTTGAAGCCAAGAATCTGACTGGTAGAGGCAGTAGGCATGGGCGCAACGAGCAGGG 539810 Query 204315 AGTTGCGCACACCGTATTTTTGGACC-CTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCA 204373 ||||||| ||||||| | |||| | || |||||| | |||||| || || Sbjct 539809 AGTTGCGGACACCGTGCTGGGCGACCTCAGC-CTTCAGGCTGTCCCAGTCCCACAGGTCA 539751 Query 204374 CTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTG 204433 |||| | | ||||||||| |||| | |||||||| | ||||| |||| | Sbjct 539750 GTGGGGGCCTTGTTCCACATGTCATACTGCAGAATGCCTTGGGAAGCGGGGCTACCCTGG 539691 Query 204434 TACGTCGGATAAGG 204447 ||||| ||| || Sbjct 539690 AACGTCTCATAGGG 539677 Score = 107 bits (118), Expect = 3e-18 Identities = 222/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131 |||||| ||| | || || ||||| ||||| || || || || | ||||| || Sbjct 539133 GTACAGAGCCTCGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCA 539074 Query 205132 CATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACA 205190 |||||||| ||| | | | || | || || | || ||| || || ||| |||||||| Sbjct 539073 CATCAGAGTCCAGGTGCCGTTC-TGTTCGACACGCTTCATGAAGAGATCGGGGATCCACA 539015 Query 205191 GGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCA 205250 | |||||||||| ||||| || | || | || | ||| ||||||| | ||| | Sbjct 539014 GAGCGTAAAACAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAA 538955 Query 205251 GCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTC 205309 | |||| | | | ||||| ||||||||||| | | | ||| | ||| || || | | Sbjct 538954 GG-AAGCTGAAGACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGC 538896 Query 205310 TTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACC 205369 ||||| ||||||||||| || ||| | | |||| | || || ||||| || | Sbjct 538895 TTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATG 538836 Query 205370 AGACCGTTGGCGGTCCCGTTCGTGC 205394 || |||||| ||| ||||| |||| Sbjct 538835 AGGCCGTTGCTGGTACCGTTGGTGC 538811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795143928675040