Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq125 183 4e-41 seq84 116 5e-21 seq41 109 7e-19 >seq125 Length=94255 Score = 183 bits (202), Expect = 4e-41 Identities = 413/618 (67%), Gaps = 11/618 (2%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||||||||| | ||| ||||| | |||||| | ||| | ||||| || Sbjct 17998 TTCTTATGTTTCCTTTTGAACTCATTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCC 17939 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 |||||||| | ||| || || || || || | ||||| || |||||||| | || ||| Sbjct 17938 TCACCACCAAGGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCTCCTCGATG 17879 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC- 7584 | || | ||||||||| || ||||| ||||| || || || || | ||||| || Sbjct 17878 GTCAAGAGCGAAACATCGAAAGTACCGCCACCAAGATCGAAGATCATGACGTTGCGCTCA 17819 Query 7585 ---GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | ||| ||| ||||||||||| ||||| || || || || || || || || Sbjct 17818 CCAGTGGCCTT----CTTGTCGAGACCGTAAGCGATGGCGGCAGCGGTAGGCTCGTTGAT 17763 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 ||||| || |||||| || || || | ||||| || || || || || || || Sbjct 17762 GATACGGAGGACGTTCAGACCGGCGATGAGACCAGCATCCTTGGTGGCCTGGCGCTGAGA 17703 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| || || || | ||| || | |||| | ||| || || || Sbjct 17702 GTCGTTGAAGTAGGCGGGAACGGTGATGACGGCATTGTTGACGGTGCCACCAAGGTAAGA 17643 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || || | || |||| || || || ||||| || |||| ||| |||| | || Sbjct 17642 CTCAGCAGTCTCCCTCATCTTAGTCAGGACCATGGAGGAAACCTCCTCAGGAGTGAAGGT 17583 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 ||| || || || || ||||| | || | || || |||| | ||||| Sbjct 17582 CTTCTCCTCGCCCTTGAACTCAACCTGGATGACAGGCTT-GCCGCTCTTC--TCAATAAC 17526 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | | | |||||||| | ||||||| ||| ||||| | ||||| Sbjct 17525 CTTGAAGGGGAAGTGCTTCATATCCGCCTGGACCTCAGCGTCGTTGAACTTGCGGCCGAT 17466 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 | |||||| || || || || ||||| | |||||||||||| |||||||| |||| Sbjct 17465 CAAACGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCCGA 17406 Query 8002 GTCCCCGATAAGACGTTC 8019 ||| ||||| ||||| || Sbjct 17405 GTCACCGATCAGACGCTC 17388 >seq84 Length=178728 Score = 116 bits (128), Expect = 5e-21 Identities = 233/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| |||||||| | ||| || || || || || || | ||| || || | ||| Sbjct 15429 TCAAAATCCTCACCACCAAGGTGAGTGTCACCAGCAGTAGCCTGGACCTCGAAAACACCC 15488 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | || | | | | || ||||| || ||||||||||| ||||| | | || | Sbjct 15489 TCGTCGACAGTGAGAATGGAGACATCGAAAGTACCACCACCAAGGTCGTAGACGATGATC 15548 Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 || ||| || | ||| | ||||| || || ||||| || | ||| ||||| || | Sbjct 15549 TGGCGCTCGG-TCTT-GTCATCCTTCTTGTCCAGGCCGTAAGCCAGAGCGGCCGCAGTGG 15606 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | || || | || ||| ||| |||||| || ||||| || | || || || || || Sbjct 15607 GCTCGTTGACAACACGGAGAACGTTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGCGG 15666 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 || || | ||||| ||||||||||||||||| || || |||| | || ||| | Sbjct 15667 CTCTCTGAGCGTCGTTGAAGTAGGCCGGGACCGTGACAACGGCGTTCTCAACAGTCTCGC 15726 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 |||| ||| || || | ||| ||||| ||| | || ||||| Sbjct 15727 CGAGGTACTGCTCGGCAACATCCTTCATCTTGCTCAGGACCAT 15769 >seq41 Length=302175 Score = 109 bits (120), Expect = 7e-19 Identities = 219/324 (68%), Gaps = 3/324 (1%) Strand=Plus/Minus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| ||| || | | |||||| || | |||||| | ||| || || || ||||| Sbjct 141936 GAAGTGGTCAAGAAGGTTGGTATCGAAGTCCTGACCACCAAGGTGAGTGTCACCAGCGGT 141877 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| |||| ||| || | |||| | | |||||||| || |||||||| Sbjct 141876 GGCCTTGACGGTGAAGACACCGCCCTGGATGTGCAGGAGGGAAACATCGAAAGTACCACC 141817 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATC---GTCGTCTTTGTTCTTATCGAGACCGTA 7611 ||| ||||| | || || |||||| | || ||| ||| |||||||||| Sbjct 141816 ACCGAGGTCGTAGATCAGGACGTTCCTCTCCTTCTCGGACTTGCCGGAGCCGAGACCGTA 141757 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 || || || || || || || || || || ||||| || ||| || || ||||| | Sbjct 141756 GGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGGA 141697 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || || || || || ||||| |||||||| ||||| || | ||| Sbjct 141696 GCCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGATGAC 141637 Query 7732 CGCGTCCGTGACTTTCTTACCGAG 7755 || | | || ||||| ||||| Sbjct 141636 GGCCTTCTCAACCTTCTTGCCGAG 141613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123796992560