Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq125 183 4e-41
seq84 116 5e-21
seq41 109 7e-19
>seq125
Length=94255
Score = 183 bits (202), Expect = 4e-41
Identities = 413/618 (67%), Gaps = 11/618 (2%)
Strand=Plus/Minus
Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465
||||||||||| | ||| ||||| | |||||| | ||| | ||||| ||
Sbjct 17998 TTCTTATGTTTCCTTTTGAACTCATTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCC 17939
Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525
|||||||| | ||| || || || || || | ||||| || |||||||| | || |||
Sbjct 17938 TCACCACCAAGGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCTCCTCGATG 17879
Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC- 7584
| || | ||||||||| || ||||| ||||| || || || || | ||||| ||
Sbjct 17878 GTCAAGAGCGAAACATCGAAAGTACCGCCACCAAGATCGAAGATCATGACGTTGCGCTCA 17819
Query 7585 ---GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641
|| | ||| ||| ||||||||||| ||||| || || || || || || || ||
Sbjct 17818 CCAGTGGCCTT----CTTGTCGAGACCGTAAGCGATGGCGGCAGCGGTAGGCTCGTTGAT 17763
Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701
||||| || |||||| || || || | ||||| || || || || || || ||
Sbjct 17762 GATACGGAGGACGTTCAGACCGGCGATGAGACCAGCATCCTTGGTGGCCTGGCGCTGAGA 17703
Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761
||||| |||||||| || || || | ||| || | |||| | ||| || || ||
Sbjct 17702 GTCGTTGAAGTAGGCGGGAACGGTGATGACGGCATTGTTGACGGTGCCACCAAGGTAAGA 17643
Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821
|| || | || |||| || || || ||||| || |||| ||| |||| | ||
Sbjct 17642 CTCAGCAGTCTCCCTCATCTTAGTCAGGACCATGGAGGAAACCTCCTCAGGAGTGAAGGT 17583
Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881
||| || || || || ||||| | || | || || |||| | |||||
Sbjct 17582 CTTCTCCTCGCCCTTGAACTCAACCTGGATGACAGGCTT-GCCGCTCTTC--TCAATAAC 17526
Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941
||| | | | | |||||||| | ||||||| ||| ||||| | |||||
Sbjct 17525 CTTGAAGGGGAAGTGCTTCATATCCGCCTGGACCTCAGCGTCGTTGAACTTGCGGCCGAT 17466
Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001
| |||||| || || || || ||||| | |||||||||||| |||||||| ||||
Sbjct 17465 CAAACGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCCGA 17406
Query 8002 GTCCCCGATAAGACGTTC 8019
||| ||||| ||||| ||
Sbjct 17405 GTCACCGATCAGACGCTC 17388
>seq84
Length=178728
Score = 116 bits (128), Expect = 5e-21
Identities = 233/343 (68%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| ||||| |||||||| | ||| || || || || || || | ||| || || | |||
Sbjct 15429 TCAAAATCCTCACCACCAAGGTGAGTGTCACCAGCAGTAGCCTGGACCTCGAAAACACCC 15488
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574
| || | | | | || ||||| || ||||||||||| ||||| | | || |
Sbjct 15489 TCGTCGACAGTGAGAATGGAGACATCGAAAGTACCACCACCAAGGTCGTAGACGATGATC 15548
Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631
|| ||| || | ||| | ||||| || || ||||| || | ||| ||||| || |
Sbjct 15549 TGGCGCTCGG-TCTT-GTCATCCTTCTTGTCCAGGCCGTAAGCCAGAGCGGCCGCAGTGG 15606
Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691
| || || | || ||| ||| |||||| || ||||| || | || || || || ||
Sbjct 15607 GCTCGTTGACAACACGGAGAACGTTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGCGG 15666
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751
|| || | ||||| ||||||||||||||||| || || |||| | || ||| |
Sbjct 15667 CTCTCTGAGCGTCGTTGAAGTAGGCCGGGACCGTGACAACGGCGTTCTCAACAGTCTCGC 15726
Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794
|||| ||| || || | ||| ||||| ||| | || |||||
Sbjct 15727 CGAGGTACTGCTCGGCAACATCCTTCATCTTGCTCAGGACCAT 15769
>seq41
Length=302175
Score = 109 bits (120), Expect = 7e-19
Identities = 219/324 (68%), Gaps = 3/324 (1%)
Strand=Plus/Minus
Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494
|||||| ||| || | | |||||| || | |||||| | ||| || || || |||||
Sbjct 141936 GAAGTGGTCAAGAAGGTTGGTATCGAAGTCCTGACCACCAAGGTGAGTGTCACCAGCGGT 141877
Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554
|| ||||| |||| ||| || | |||| | | |||||||| || ||||||||
Sbjct 141876 GGCCTTGACGGTGAAGACACCGCCCTGGATGTGCAGGAGGGAAACATCGAAAGTACCACC 141817
Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATC---GTCGTCTTTGTTCTTATCGAGACCGTA 7611
||| ||||| | || || |||||| | || ||| ||| ||||||||||
Sbjct 141816 ACCGAGGTCGTAGATCAGGACGTTCCTCTCCTTCTCGGACTTGCCGGAGCCGAGACCGTA 141757
Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671
|| || || || || || || || || || ||||| || ||| || || ||||| |
Sbjct 141756 GGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCAATGGA 141697
Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || || || || || || || ||||| |||||||| ||||| || | |||
Sbjct 141696 GCCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGATGAC 141637
Query 7732 CGCGTCCGTGACTTTCTTACCGAG 7755
|| | | || ||||| |||||
Sbjct 141636 GGCCTTCTCAACCTTCTTGCCGAG 141613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635123796992560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |