Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq121 118 9e-22 >seq121 Length=97770 Score = 118 bits (130), Expect = 9e-22 Identities = 268/401 (67%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 29985 GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 ||||||||| ||||| | | ||||| || || || ||||| | |||| Sbjct 12143 GCTCACGTAGAACTGCGCGAACATATGGCAAGGCGGCAGGGCCATCTTTTTTAGGTCTGC 12202 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 ||||||||| |||| || ||||||||| | ||| | || |||||| | | ||| | Sbjct 12203 GGGGTTCCACGCGCTCATGATGATGCGACGGTCATAGGGCTTGTTCTTCAGCTTGTCAAT 12262 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 ||| |||||||||||| ||| ||||| ||||| | | | |||| || || Sbjct 12263 CACGTCGGCCAGCTGATCCACGCCCTGCCCCGTATAGTCCGTCTTTGCGTCCACATATTC 12322 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 || ||||| || | ||| ||||| ||||| || || || ||||| || || || | ||| Sbjct 12323 GGCGCCGAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCAAGGTCGCCTTCCTCGCGGTG 12382 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 | || ||| |||| | || || | || || ||| ||||||||||||| | || Sbjct 12383 CGAGAGGCCGACGCTGTCGAGGAACTCGCGAGATCCATTGCCGTCCCAGATCTTGATGCC 12442 Query 30285 CTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30344 ||| || || || ||| |||| || ||||||||||| ||| || | || Sbjct 12443 GGCCTCCGAAAGAGGCTTTGAGGATGTGATGCCGGCGACGAACCACAACAGTTCGGCGAC 12502 Query 30345 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||| | || ||||| | ||| || |||||||| || Sbjct 12503 AACGGC--GCGAAGGAAGACACGCTTTGTGGTGAGGAGCGG 12541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611952649382