Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12 318 1e-81 seq95 226 5e-54 >seq12 Length=708323 Score = 318 bits (352), Expect = 1e-81 Identities = 1100/1691 (65%), Gaps = 66/1691 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||| ||||||| ||| || |||||||||||||| ||||| Sbjct 540278 ACAGTGAACTGGATGGGAGCAGCGGCAGCCTGGGTACGGAGATAGTACATGCCAGTCTTG 540219 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 || || ||| ||| ||| | |||||| | |||| || || | || || | Sbjct 540218 AGACCGAGCTT---CCAACCGGCGAAGTGCATGGAGGTGATCTTGCCCATCGTAGGATCC 540162 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 | || || || | ||| |||||||| ||| || ||||| | | Sbjct 540161 T--------TCATG-------TGAATGTTGAGGGACTGCGACTGATCGATGAAGGCACCA 540117 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | |||||| ||||| | | ||| | ||| ||||||||||| ||||||||| ||| Sbjct 540116 CGGTCAGCAGCCATCTGGACGATGGTACGCTGAGAGAGCTCCCAGACGGTCTTGTAGAGC 540057 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC 212849 | |||| ||| || |||| | ||| || | ||| | || || || | | | Sbjct 540056 GCCTTGATGTCATCCGGGATGTTGGGAATTTGCTGGATGGAGCCGTTGG--AAGCAATGA 539999 Query 212850 TGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGA 212906 ||| | ||| | || ||| || || |||| ||||| ||| | || Sbjct 539998 TGCGGTTCTTCATCTGGTCCGACCACAGACCGA-GGTCGACCAGGTCCTTCAGGAGCCAG 539940 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| ||||| | | || | | ||||| ||| |||||||| Sbjct 539939 GGGTTGACGACCTGGAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTCGAAGTGTAA 539880 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||| || |||||||| || ||| || |||||||| || Sbjct 539879 GGCTCGAAGCACTCGTTGAAGCCAAGAATCTGACTGGTAGAGGCAGTAGGCATGGGCGCA 539820 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGT 213084 || || || ||| | || ||||||| | ||| | || | | | ||| | |||||| Sbjct 539819 ACGAGCAGGGAGTTGCGGACACCGTGCTGGGCGACCTCAGCCTTC-AGGCTGT-CCCAGT 539762 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| | ||| || ||| || ||||||||||| |||||| ||||||| Sbjct 539761 CCCACAGGTCAGTGGGGGCCTTGT---------TCCACATGTCATACTGCAGAATGCCTT 539711 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 | ||||||| |||||| | | |||||||| || | |||||| ||||| || Sbjct 539710 GGGAAGCGGGGCTACCCTGGAACGTCTCATAGGGGCCGTGTTGCTTGGCGAGCTCAATGG 539651 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | || || ||||||| ||||||||| || || |||| ||||||| | |||||||| Sbjct 539650 AGGCAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGGTGCTTGGCCT 539591 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCG-TTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 | || || ||||||||| | | | | |||| |||| || || || | ||| || Sbjct 539590 CAGGAGAATCGAAGGGCAT-ACGAAGAGCCAGGAAAGCATCGGCGAGACCGTTGACACCA 539532 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTT-AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382 | | ||||| | || | || ||| || ||| |||| || |||||| ||| Sbjct 539531 ACAGCAATGGGGCGATGGCGCATGTTGCTCCTCCTAGC-CTCCGGCACGGGGTAGTGGTT 539473 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | ||||||||||||||| ||||| | | ||||| ||||||| || | || Sbjct 539472 GATGTCGATGATCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCATGAAGCTTCTT 539413 Query 213443 GTGAT--TGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | | | ||| | | | || | | ||||| ||| || || | | || ||| Sbjct 539412 GAAGTCATAAACTCCCTG--CTCGACATTGACAAAGGTAGGAAGTGCCAGGGATGCAAGG 539355 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||| || || ||||| | || | | |||||||| | |||||| ||| |||||| | Sbjct 539354 TTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAGAGGTTGGAG 539295 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAGAG 213619 | ||||||||||| ||||||| ||| ||| ||||| | |||| |||||||| || Sbjct 539294 CTGCGGATGGTGCCAAGGTTCTTCTGG-TTGCTCTTGCGGTTGCAGTGGTCCTTGTACAG 539236 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 |||| ||||| || ||||| | ||| | | | || || | |||||| | | ||| Sbjct 539235 CATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGGGC 539176 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGA 213738 || | | | || || | ||| | | ||||||||| ||||| || | | || Sbjct 539175 ----ACGAACGGTCTCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAGCCTCGA 539120 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 | |||| ||| |||| | | || || || || ||| ||||| || ||||| Sbjct 539119 ACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTCCAGG 539060 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||| | | ||| | || |||||| || || |||| |||||| ||| ||||||| Sbjct 539059 TGCCGTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAACAGGT 539000 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | | | ||| ||| ||| ||| ||||| || || || ||| |||| | Sbjct 538999 CACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAGACAT 538940 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGT 213975 | || ||||||||||| | ||| ||||| || || || | || | ||||| ||||||| Sbjct 538939 CGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCCTGGT 538880 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG-- 214033 | || | ||| ||||| | | || || | || | || |||||| ||| Sbjct 538879 CGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTG--CTGGT 538822 Query 214034 TCCGTTGGTTCCCGCTATATACGAGCC-GGAG-GCCCTCAGGTTGCTCATGGAGAGCCCT 214091 |||||||| || || ||||| ||| | || || | | || ||| ||| || Sbjct 538821 ACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACAT--TGAGGCCG 538764 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 || ||||||||| |||||| |||||||||||| | ||| || || ||| || | Sbjct 538763 ATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCTCA 538704 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCA 214211 |||||||| || | | || | | ||||||| | ||||| ||| ||| | || Sbjct 538703 ATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGAAGCCAGCTGAGGCTTGGGAGTACCG 538644 Query 214212 GAGTTGAAAAG 214222 | |||||| || Sbjct 538643 GCGTTGAAGAG 538633 >seq95 Length=147769 Score = 226 bits (250), Expect = 5e-54 Identities = 366/521 (70%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 14118 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTAAGCGAGATGTTCTC 14177 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||||| | ||| || | | | ||| ||||| ||||| Sbjct 14178 CATGAAGTCGAAGGGGTTGGTGGAGTTGTAGAACTTCTTGTT--GCCCAGTGCCACCAGC 14235 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||| ||||| | ||| || || ||||||||| | ||| Sbjct 14236 AGGCGGTCTGCGACGAACTCAATGTACTGGCGCATAAGATTGGCGTTCATGCCGAGGAGA 14295 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | ||||| ||||||||||| || | ||||| || | ||| Sbjct 14296 GCGACGGGAAGGGCATCCGTGAGGAACTCCTTCTCGATATCTACGGCCTCGGTGATGATC 14355 Query 48077 TGCTTAACG----CGGGACTCTGAGGGTTTG--TTGCGCAGGTGCTTGGCATAGAGCATG 48130 | || ||| |||| || || || | ||| | |||| | | |||| | Sbjct 14356 TTCTCGACGGCATCGGGGCTG---GGCTTCGACTTG---ATGTGCGAGA---ACAGCAGG 14406 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| | |||| || ||||| || ||||||| |||| ||||| |||| Sbjct 14407 CAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTGAGA 14466 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || || |||||||| || | ||||| || ||| ||||||| Sbjct 14467 CCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCACTGAAGAAG 14526 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || ||||| || ||| | || | | | |||||| | ||||||||| || Sbjct 14527 ATACCCTCGACAGCCGCAAAAGCGATCAGGCGCGATGCGAAAGTCGAGTTCTTGTCGCAG 14586 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||||| || |||||||| |||||||||||||| || || Sbjct 14587 ATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATACAAGG 14627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931519595522560