Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12 230 4e-55 seq95 154 3e-32 >seq12 Length=708323 Score = 230 bits (254), Expect = 4e-55 Identities = 690/1044 (66%), Gaps = 47/1044 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||||||||| |||||| ||||||| ||||||||| ||| Sbjct 539645 GTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGGTGCTTGGCCTCAGGA 539586 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||| |||||||||||| || | | || | ||||| || || | || || | | | Sbjct 539585 GAATCGAAGGGCATACGAAGAGCCAGGAAAGCATCGGCGAGACCGTTGACACCAACAGCA 539526 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | || | | ||||| | || || || |||||||| || ||||| || Sbjct 539525 ATGGGGCGATGGCGCATGTTGCT--CCTCCTAGCCTCCGGCACGGGGTAGTGGTTGATGT 539468 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||| |||||| || |||| | || || ||||||| Sbjct 539467 CGATGATCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCATGAAGCTTCT------ 539414 Query 221655 TGAA--CACCAACTCGCCGC-CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 |||| || ||||| | || || | | || |||| | || || | | Sbjct 539413 TGAAGTCATAAACTCCCTGCTCGACATTGA---------CAAAGGTAGGAAGTGCCAGGG 539363 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 || ||||| || || || ||||| || | || |||| | ||||| |||| Sbjct 539362 ATGCAAGGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAGA 539303 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830 ||||| || |||||| || |||| || || || |||||| ||| ||| | ||| Sbjct 539302 GGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCC 539244 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||| ||||| ||||| ||||||||| | ||||||| | ||||| || |||||| Sbjct 539243 TTGTACAGCATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGC 539184 Query 221891 TCTCTGGCGCTC-ACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATA 221946 | ||||| || | | || ||| ||| | |||||| ||| || ||| | ||| | Sbjct 539183 T-TCTGG-GCACGAACGGTCTCACGACCCCGACCCTC---CTTCTCGTACTGCTCGTACA 539129 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 |||| | | |||| || ||||| | ||| | || || || ||| | ||| ||||| Sbjct 539128 GAGCCT--CGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACAT 539071 Query 222007 CAGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 |||| ||||| ||| ||| | || ||| | || ||||||||| || ||||||||||| | Sbjct 539070 CAGAGTCCAGGTGCC-GTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAG 539012 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | ||| || || | | || ||| ||| |||| ||| || | || || | | Sbjct 539011 CGTAAAACAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGA 538952 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 | || | || || ||||||||||| || || | ||| | || ||||| ||||||| Sbjct 538951 AGCTGAAGACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGT 538892 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || | ||| | | | |||| | | || || | || | || Sbjct 538891 TGCCACCCTGGTCGA-CATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGG 538833 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 |||||| |||||||||||| ||| || | ||| | | ||| || Sbjct 538832 CCGTTGCTGGTACCGTTGGTGCCAGCAATATA---GCTGCCAGTAGCGCGAATAC-GGTG 538777 Query 222305 GACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 ||||| |||||||||||||||| || || |||||||||||| |||| || || || Sbjct 538776 GACATTGAGGCCGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATC 538717 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || ||||||||| | || | || || || || | || ||||| Sbjct 538716 GTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGAAGCCAGCTGAGG 538657 Query 222421 TTTGGTGGAACAGGCGTTAAACAG 222444 |||| | || |||||| || || Sbjct 538656 CTTGGGAGTACCGGCGTTGAAGAG 538633 >seq95 Length=147769 Score = 154 bits (170), Expect = 3e-32 Identities = 337/508 (66%), Gaps = 7/508 (1%) Strand=Plus/Minus Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC 25875 ||||||| |||||| |||||| || |||||| | | ||| | | || || | Sbjct 14621 ATCAAGAAGAAGGCCGACTGGGCCCTGCGCTGGATCTGCGACAAGAACTCGACTTTCGCA 14562 Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935 ||| ||| | || ||||| ||||| ||||| ||||| ||||| || || || || || Sbjct 14561 TCGCGCCTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCC 14502 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCAT 25994 ||||||||||| ||| || || ||||||||| || ||||| || ||||||||||| Sbjct 14501 ATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTC-ACTTTCTCTAACGAGCTCAT 14443 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054 | | ||||||||| | || | || || || |||||||| | | || ||| | Sbjct 14442 CTCTCGTGACGAGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCG---CACATCAA 14386 Query 26055 CCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 || || | || ||||| | | ||||||| ||||| || || |||||||| Sbjct 14385 GTCGAAGCCCAGCCCCGATGCCGTCGAGAAGATCATCACCGAGGCCGTAGATATCGAGAA 14326 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174 |||||| | | ||||||||| || || ||| | Sbjct 14325 GGAGTTCCTCACGGATGCCCTTCCCGTCGCTCTCCTCGGCATGAACGCCAATCTTATGCG 14266 Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCT 26233 ||| |||||||||| || || |||| ||||| ||| || ||||| | | ||| Sbjct 14265 CCAGTACATTGAGTTCGTCGCAGACCGCCTGCTGGTGGCA-CTGGGCAACAAGAAGTTCT 14207 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| | | ||||| |||||||| ||||| ||||| ||| | | || |||||||||| Sbjct 14206 ACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTAACGGCAAGACCAACT 14147 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||| || ||| | || || ||||| || Sbjct 14146 TCTTCGAGAAGCGCGTTGGTGACTACCA 14119 Score = 105 bits (116), Expect = 1e-17 Identities = 167/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| || ||| |||||| || || ||||| ||||| Sbjct 15014 ATCTGGCAGATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCTGAGGAGATCGATCTC 14955 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||| | ||| |||| || || ||| ||| ||||| ||| || ||| Sbjct 14954 TCCAAGGACCTTCACGACTGGAACAAGCGTCT---CAACGACGATGAGCGCTTCTTCATC 14898 Query 25594 T---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | |||| | || ||||| || ||||||||||| || || |||||||| || |||| Sbjct 14897 TCCCACGTCCTCGCTTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTCGAG 14838 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | |||| | || || ||| | ||||| || |||||||| |||||||| Sbjct 14837 CGTTTCAGCTCCGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 14782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928831633624960