Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq12 230 4e-55
seq95 154 3e-32
>seq12
Length=708323
Score = 230 bits (254), Expect = 4e-55
Identities = 690/1044 (66%), Gaps = 47/1044 (5%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|| || |||||||||||||||||||| |||||| ||||||| ||||||||| |||
Sbjct 539645 GTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGGTGCTTGGCCTCAGGA 539586
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
||| |||||||||||| || | | || | ||||| || || | || || | | |
Sbjct 539585 GAATCGAAGGGCATACGAAGAGCCAGGAAAGCATCGGCGAGACCGTTGACACCAACAGCA 539526
Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | || | | ||||| | || || || |||||||| || ||||| ||
Sbjct 539525 ATGGGGCGATGGCGCATGTTGCT--CCTCCTAGCCTCCGGCACGGGGTAGTGGTTGATGT 539468
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654
|||| | ||||| |||||| || |||| | || || |||||||
Sbjct 539467 CGATGATCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCATGAAGCTTCT------ 539414
Query 221655 TGAA--CACCAACTCGCCGC-CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
|||| || ||||| | || || | | || |||| | || || | |
Sbjct 539413 TGAAGTCATAAACTCCCTGCTCGACATTGA---------CAAAGGTAGGAAGTGCCAGGG 539363
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771
|| ||||| || || || ||||| || | || |||| | ||||| ||||
Sbjct 539362 ATGCAAGGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAGA 539303
Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830
||||| || |||||| || |||| || || || |||||| ||| ||| | |||
Sbjct 539302 GGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCC 539244
Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890
||||| ||||| ||||| ||||||||| | ||||||| | ||||| || ||||||
Sbjct 539243 TTGTACAGCATGAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGC 539184
Query 221891 TCTCTGGCGCTC-ACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATA 221946
| ||||| || | | || ||| ||| | |||||| ||| || ||| | ||| |
Sbjct 539183 T-TCTGG-GCACGAACGGTCTCACGACCCCGACCCTC---CTTCTCGTACTGCTCGTACA 539129
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
|||| | | |||| || ||||| | ||| | || || || ||| | ||| |||||
Sbjct 539128 GAGCCT--CGAACTCGTCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACAT 539071
Query 222007 CAGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
|||| ||||| ||| ||| | || ||| | || ||||||||| || ||||||||||| |
Sbjct 539070 CAGAGTCCAGGTGCC-GTTCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAG 539012
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
| | ||| || || | | || ||| ||| |||| ||| || | || || | |
Sbjct 539011 CGTAAAACAGGTCACGAGCGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGA 538952
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
| || | || || ||||||||||| || || | ||| | || ||||| |||||||
Sbjct 538951 AGCTGAAGACATCGGCATGCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGT 538892
Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244
|||||||||| || | ||| | | | |||| | | || || | || | ||
Sbjct 538891 TGCCACCCTGGTCGA-CATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGG 538833
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304
|||||| |||||||||||| ||| || | ||| | | ||| ||
Sbjct 538832 CCGTTGCTGGTACCGTTGGTGCCAGCAATATA---GCTGCCAGTAGCGCGAATAC-GGTG 538777
Query 222305 GACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360
||||| |||||||||||||||| || || |||||||||||| |||| || || ||
Sbjct 538776 GACATTGAGGCCGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATC 538717
Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420
||| ||||| || ||||||||| | || | || || || || | || |||||
Sbjct 538716 GTAGATACCCTCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGAAGCCAGCTGAGG 538657
Query 222421 TTTGGTGGAACAGGCGTTAAACAG 222444
|||| | || |||||| || ||
Sbjct 538656 CTTGGGAGTACCGGCGTTGAAGAG 538633
>seq95
Length=147769
Score = 154 bits (170), Expect = 3e-32
Identities = 337/508 (66%), Gaps = 7/508 (1%)
Strand=Plus/Minus
Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC 25875
||||||| |||||| |||||| || |||||| | | ||| | | || || |
Sbjct 14621 ATCAAGAAGAAGGCCGACTGGGCCCTGCGCTGGATCTGCGACAAGAACTCGACTTTCGCA 14562
Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935
||| ||| | || ||||| ||||| ||||| ||||| ||||| || || || || ||
Sbjct 14561 TCGCGCCTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGATCCTTCGCTTCC 14502
Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCAT 25994
||||||||||| ||| || || ||||||||| || ||||| || |||||||||||
Sbjct 14501 ATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTC-ACTTTCTCTAACGAGCTCAT 14443
Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054
| | ||||||||| | || | || || || |||||||| | | || ||| |
Sbjct 14442 CTCTCGTGACGAGGGTATGCATACCGACTTCGCTTGCCTGCTGTTCTCG---CACATCAA 14386
Query 26055 CCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114
|| || | || ||||| | | ||||||| ||||| || || ||||||||
Sbjct 14385 GTCGAAGCCCAGCCCCGATGCCGTCGAGAAGATCATCACCGAGGCCGTAGATATCGAGAA 14326
Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174
|||||| | | ||||||||| || || ||| |
Sbjct 14325 GGAGTTCCTCACGGATGCCCTTCCCGTCGCTCTCCTCGGCATGAACGCCAATCTTATGCG 14266
Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCT 26233
||| |||||||||| || || |||| ||||| ||| || ||||| | | |||
Sbjct 14265 CCAGTACATTGAGTTCGTCGCAGACCGCCTGCTGGTGGCA-CTGGGCAACAAGAAGTTCT 14207
Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293
||| | | ||||| |||||||| ||||| ||||| ||| | | || ||||||||||
Sbjct 14206 ACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTAACGGCAAGACCAACT 14147
Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||| || ||| | || || ||||| ||
Sbjct 14146 TCTTCGAGAAGCGCGTTGGTGACTACCA 14119
Score = 105 bits (116), Expect = 1e-17
Identities = 167/236 (71%), Gaps = 9/236 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| || ||| |||||| || || ||||| |||||
Sbjct 15014 ATCTGGCAGATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCTGAGGAGATCGATCTC 14955
Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|||||||| | ||| |||| || || ||| ||| ||||| ||| || |||
Sbjct 14954 TCCAAGGACCTTCACGACTGGAACAAGCGTCT---CAACGACGATGAGCGCTTCTTCATC 14898
Query 25594 T---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650
| |||| | || ||||| || ||||||||||| || || |||||||| || ||||
Sbjct 14897 TCCCACGTCCTCGCTTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTCGAG 14838
Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
| |||| | || || ||| | ||||| || |||||||| ||||||||
Sbjct 14837 CGTTTCAGCTCCGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 14782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928831633624960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |