Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 6e-18
seq45 96.9 1e-14
>seq4
Length=882551
Score = 107 bits (118), Expect = 6e-18
Identities = 191/279 (68%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||| | |||||| | ||||| ||||||||||||||| |||||||| | || ||
Sbjct 562662 CATGACGTCTTCAAGTGCCTTGACTAAACGACGCTGAATGTAACCAGTCTCGGCAGTCTT 562721
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || ||||| | |||||| |||| || |||||||| | |||| ||
Sbjct 562722 GACAGCGGTATCGATGAGACCCTCCCGACCAGCCATGGCGTGGAAGAAGAACTCTGAGGG 562781
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || || | | |||| ||| ||| || || | || | ||||||| ||||
Sbjct 562782 TGTGAGACCACGGAGGTAGGAATTCTGAACAAATCCTCTGGCTGCAGGCGAATAGTCGTC 562841
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||| || || || || || || | || || | ||| |||| |||||||| || || ||
Sbjct 562842 CTTCGTGAAATGCGGGAGAGTGCGGTACTTGAAACCGAATGGAATACGCTTACCCTCGAC 562901
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
| || || || | || ||||||| ||||| ||
Sbjct 562902 GGATTGTTGACCGACAAGCGCCGTCATCTGGGAAATGTT 562940
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| | || ||||| ||| || | |||||||||
Sbjct 561895 AGAATTTCCTTGAGACGTGGGACACCGAGCGTGACGTT---CTTCGAGGACACACCAGCA 561951
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|||||||| || ||||| || | || || | ||||||||||| ||| || |||| |
Sbjct 561952 AAGTGGAAGGTGTTCAGTGTCATCTGTGTGGCAGGCTCACCAATCGATTGCGCGGCAAGC 562011
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||| ||||| ||
Sbjct 562012 ACACCAACCATCTCTCCAGG 562031
>seq45
Length=280565
Score = 96.9 bits (106), Expect = 1e-14
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490
|| |||| ||| || || || | || | || || |||| |||| | |||||||
Sbjct 61743 TGAACGCGGTATGCGTCCGAGACTTCGAACAGACGCTCCTTCAAGAAGGCACTTGCACCG 61802
Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550
|| ||||||||||||||||| ||||| || || ||||| ||||||||||| | || | |
Sbjct 61803 TGGGAAATCATACAATCACGTTCCATCTCTCCAAAACGCAGACCACCATCTCTGGCACGA 61862
Query 251551 CCCTCGGCAGGCTGACGAGTGAG 251573
|| ||| | |||||||| |||||
Sbjct 61863 CCTTCGACGGGCTGACGGGTGAG 61885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471796215410158
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |