Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 107 6e-18 seq45 96.9 1e-14 >seq4 Length=882551 Score = 107 bits (118), Expect = 6e-18 Identities = 191/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||| | ||||| ||||||||||||||| |||||||| | || || Sbjct 562662 CATGACGTCTTCAAGTGCCTTGACTAAACGACGCTGAATGTAACCAGTCTCGGCAGTCTT 562721 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || ||||| | |||||| |||| || |||||||| | |||| || Sbjct 562722 GACAGCGGTATCGATGAGACCCTCCCGACCAGCCATGGCGTGGAAGAAGAACTCTGAGGG 562781 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | | |||| ||| ||| || || | || | ||||||| |||| Sbjct 562782 TGTGAGACCACGGAGGTAGGAATTCTGAACAAATCCTCTGGCTGCAGGCGAATAGTCGTC 562841 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| || || || || || || | || || | ||| |||| |||||||| || || || Sbjct 562842 CTTCGTGAAATGCGGGAGAGTGCGGTACTTGAAACCGAATGGAATACGCTTACCCTCGAC 562901 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | || || || | || ||||||| ||||| || Sbjct 562902 GGATTGTTGACCGACAAGCGCCGTCATCTGGGAAATGTT 562940 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| ||| || | ||||||||| Sbjct 561895 AGAATTTCCTTGAGACGTGGGACACCGAGCGTGACGTT---CTTCGAGGACACACCAGCA 561951 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 |||||||| || ||||| || | || || | ||||||||||| ||| || |||| | Sbjct 561952 AAGTGGAAGGTGTTCAGTGTCATCTGTGTGGCAGGCTCACCAATCGATTGCGCGGCAAGC 562011 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||| ||||| || Sbjct 562012 ACACCAACCATCTCTCCAGG 562031 >seq45 Length=280565 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 || |||| ||| || || || | || | || || |||| |||| | ||||||| Sbjct 61743 TGAACGCGGTATGCGTCCGAGACTTCGAACAGACGCTCCTTCAAGAAGGCACTTGCACCG 61802 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || ||||||||||||||||| ||||| || || ||||| ||||||||||| | || | | Sbjct 61803 TGGGAAATCATACAATCACGTTCCATCTCTCCAAAACGCAGACCACCATCTCTGGCACGA 61862 Query 251551 CCCTCGGCAGGCTGACGAGTGAG 251573 || ||| | |||||||| ||||| Sbjct 61863 CCTTCGACGGGCTGACGGGTGAG 61885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471796215410158