Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq125 109 5e-19 seq12 84.2 2e-11 >seq125 Length=94255 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| |||||||| || ||| | | Sbjct 36159 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36218 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || || || Sbjct 36219 GATACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 36278 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||| ||||| | | | || || || ||| Sbjct 36279 CAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCGGACTACAAC 36338 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || ||||| ||||||||| |||| Sbjct 36339 ATCCAGAAGGAGTCCACACTCCACTTGGTGCTGCG 36373 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| |||||||| || ||| | | Sbjct 36387 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36446 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || || || || || || || Sbjct 36447 GATACCATCGATAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAG 36506 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||| || | | |||| || || ||| Sbjct 36507 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAAGACGGTCGTACGCTGTCCGACTACAAC 36566 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| ||||| || ||||||||| | || | || || ||| Sbjct 36567 ATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGTGGC 36614 >seq12 Length=708323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/287 (67%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 138360 CTCCCACACGGTCTTGTATAGATCACGAATATGTCG--CGGTATTGTTGCAATATTTTGA 138417 |||||| ||||||||||| || | | ||||| ||| || | | ||| | || Sbjct 540078 CTCCCAGACGGTCTTGTAGAG--CGCCTTGATGTCATCCGGGATGTTGGGAATTTGCTGG 540021 Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTG 138477 ||| ||||||| ||||||||||| || |||| | || ||||| | | | Sbjct 540020 ATGGAGCCGTTGGAAGCAATGATGCGGTTCTTCATCTGGTCCGACCACAGACCGAGGTCG 539961 Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537 | || ||| || | || | ||| | |||||| || ||||||||||| || || ||| Sbjct 539960 ACCAGGTCCTTCAGGAGCCAGGGGTTGACGACCTGGAACTCACCGGCCAAGACACGGCGA 539901 Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597 ||||||||| ||| ||||||| || | |||||| || ||||||||| || Sbjct 539900 GAGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGAAGCCAAGAATCTGACTGGTA 539841 Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTG 138644 | || || |||||| ||| || | || || || || | |||||| Sbjct 539840 GAGGCAGTAGGCATGGGCGCAACGAGCAGGGAGTTGCGGACACCGTG 539794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891222701520