Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq125 109 5e-19
seq12 84.2 2e-11
>seq125
Length=94255
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| |||||||| || ||| | |
Sbjct 36159 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36218
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || || || || || || ||
Sbjct 36219 GATACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 36278
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| ||||| || ||||| ||||| | | | || || || |||
Sbjct 36279 CAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAGGACGGTCGCACTCTCTCGGACTACAAC 36338
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || ||||| || ||||| ||||||||| ||||
Sbjct 36339 ATCCAGAAGGAGTCCACACTCCACTTGGTGCTGCG 36373
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| |||||||| || ||| | |
Sbjct 36387 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACGCTCGAGGTGGAATCTTCG 36446
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| || || || || || || || || ||
Sbjct 36447 GATACCATCGATAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAG 36506
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| ||||| || |||||||| || | | |||| || || |||
Sbjct 36507 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAAGACGGTCGTACGCTGTCCGACTACAAC 36566
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||||||||| ||||| || ||||||||| | || | || || |||
Sbjct 36567 ATTCAAAAGGAGTCGACTCTGCACTTGGTGCTCCGTCTCCGTGGTGGC 36614
>seq12
Length=708323
Score = 84.2 bits (92), Expect = 2e-11
Identities = 192/287 (67%), Gaps = 4/287 (1%)
Strand=Plus/Minus
Query 138360 CTCCCACACGGTCTTGTATAGATCACGAATATGTCG--CGGTATTGTTGCAATATTTTGA 138417
|||||| ||||||||||| || | | ||||| ||| || | | ||| | ||
Sbjct 540078 CTCCCAGACGGTCTTGTAGAG--CGCCTTGATGTCATCCGGGATGTTGGGAATTTGCTGG 540021
Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTG 138477
||| ||||||| ||||||||||| || |||| | || ||||| | | |
Sbjct 540020 ATGGAGCCGTTGGAAGCAATGATGCGGTTCTTCATCTGGTCCGACCACAGACCGAGGTCG 539961
Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537
| || ||| || | || | ||| | |||||| || ||||||||||| || || |||
Sbjct 539960 ACCAGGTCCTTCAGGAGCCAGGGGTTGACGACCTGGAACTCACCGGCCAAGACACGGCGA 539901
Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597
||||||||| ||| ||||||| || | |||||| || ||||||||| ||
Sbjct 539900 GAGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGAAGCCAAGAATCTGACTGGTA 539841
Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTG 138644
| || || |||||| ||| || | || || || || | ||||||
Sbjct 539840 GAGGCAGTAGGCATGGGCGCAACGAGCAGGGAGTTGCGGACACCGTG 539794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449891222701520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |