Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 197 2e-44 seq95 178 2e-38 seq49 127 3e-23 seq12 109 9e-18 seq16 87.8 3e-11 >seq8 Length=768349 Score = 197 bits (218), Expect = 2e-44 Identities = 367/526 (70%), Gaps = 12/526 (2%) Strand=Plus/Minus Query 2411475 GTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCC 2411534 |||||||||| ||||| || ||| | ||| |||||||| | ||| || || Sbjct 219712 GTAGCCCAGCTTGGGCAGCACCTCCTTCGCCAGGGCGAAGATCTTCCTCTGATCCACGCC 219653 Query 2411535 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAC 2411594 ||| ||||| |||| ||||| |||| ||||||||| || ||||||||||||||||||| Sbjct 219652 GCCGAACTGCACGTCCACGTCCAGGTACTGCTCGTCCAGAGCCTGCATGAGCGGGTAGAT 219593 Query 2411595 GAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCTGGGCGGCGGCCTTTTGCG 2411653 ||| ||| |||||||| | || | |||||| |||| ||| ||||| | | || Sbjct 219592 CAGGCCCGATAGCAGCGGGTTGTCCGT-CTGCTTGACGACCTCGGCACCGGCCCTCTTCG 219534 Query 2411654 C--CGTGC-CGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGC 2411710 | ||||| || ||||| | | || ||||||||| ||||| | | ||||| | | | Sbjct 219533 CATCGTGCTCGGTGGTCATG-GTGC--TCAGGCGCAGCAGGTCCATCATGTAGTCCGAAC 219477 Query 2411711 CATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCT 2411770 | |||||| |||||||| |||| || || |||||||| | ||| ||||| | | || Sbjct 219476 TCTTCTGGTACTCGCTGCCCAGCACGAACTCCAGACGATCGACCGGCACGCCCACGGCCT 219417 Query 2411771 GGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACG 2411830 |||| | ||||| | | || ||| | | |||| | ||| || | | | | Sbjct 219416 TGAGCGACTCGGTGATGACGAGCTTGTAGTACTTGGCGCGGTAGTTGACCAGCT-CAATG 219358 Query 2411831 GCGTCTTGC-CATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACAT 2411889 | | ||| | ||||| ||| ||| || | |||||| | ||||| | || | || Sbjct 219357 GGGGCTTTCAGGTTGTCCAGGAAGGCATGGATGTCGGCTAGCAGGATTTTGACGTGGCAG 219298 Query 2411890 CCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTT 2411948 |||||||| || || | ||| | || | |||||||| |||||||| ||| || ||| | Sbjct 219297 CCGGCCTGCAGGAACTGGGCGATCTTGAGCATGGGCACGAAGTAGCCGCAG-TGCGGCCT 219239 Query 2411949 GCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGCC 2411994 ||| || | |||||||||||| || || ||| || |||||| || Sbjct 219238 GCCGGTGGTCGCGGTGCCCCAGTAGATCTTGAGCGGCCGCTCGCCC 219193 >seq95 Length=147769 Score = 178 bits (196), Expect = 2e-38 Identities = 239/329 (73%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| || || || |||||| |||||| |||||||||||||| | | Sbjct 14105 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTAA 14164 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | |||| ||||| | || | Sbjct 14165 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGAACTTCTTGTTGCCCA 14224 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | ||||||||||| |||||||| ||||||||||||| ||| || |||||||| Sbjct 14225 GTGCCACCAGCAGGCGGTCTGCGACGAACTCAATGTACTGGCGCATAAGATTGGCGTTCA 14284 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| ||| || ||||| || | || ||| ||||| |||||||| || ||||||| Sbjct 14285 TGCCGAGGAGAGCGACGGGAAGGGCATCCGTGAGGAACTCCTTCTCGATATCTACGGCCT 14344 Query 794131 CGATGATGATCTGCCTG--GGCACGTCGGACGACGGCTTGTCGAC--GAGCATCGTGTAG 794186 || ||||||||| | | |||| |||| |||| ||||| || || | | Sbjct 14345 CGGTGATGATCTTCTCGACGGCA--TCGGGGCTGGGCT--TCGACTTGATGTGCGAGAAC 14400 Query 794187 AGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||||||| || |||||| ||||| ||| Sbjct 14401 AGCAGGCAAGCGAAGTCGGTATGCATACC 14429 Score = 102 bits (112), Expect = 1e-15 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | |||||||| |||| || || | |||||||| |||||||| Sbjct 14806 GCCTCGGGGATCTGGACCTCGGAGCTGAAACGCTCGACAAGGTTCTCGTTGACGATGCCA 14865 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267 || ||||||||| || ||||||||||| ||| ||| ||||| |||||| ||| Sbjct 14866 TCAGAGGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTCATCGTCGTTGAGA 14925 Query 796268 -GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | ||| | ||| |||| |||||| || ||||| || ||| Sbjct 14926 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCAGCCGTCCAGAAAGAG 14985 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || || ||||| |||||||||| ||| ||| Sbjct 14986 GCTTCAGCCTTCTTGTACATCTGCCAGATC 15015 Score = 87.8 bits (96), Expect = 3e-11 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 794549 TGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG-TCCTTGACGTAGGTGTCGATG 794607 ||||||||||| || |||| || || | | ||| || | | ||||||||||||| Sbjct 14684 TGTCGATGGCGTTGAACAGGTAGTTGCGCT-GCCTGGGCTCGCTAATGTAGGTGTCGATG 14742 Query 794608 AGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||||||||| ||||| ||||| || || |||||||||||| || |||||| Sbjct 14743 AGGAGAGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAG 14802 >seq49 Length=264639 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||||||||||||| |||| || ||| | || ||||||||||| || ||| Sbjct 204850 GCCGCCAACTACCTCGACATCAAGGCCCTTCTTGATGTTGGCTGCAAGACCGTCGCAAAC 204909 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| ||||| || || |||||||| || |||||| || ||| Sbjct 204910 ATGATCAAGGGCAAGTCTCCCGACGAGATTCGCAAGACGTTCAACATCCAGAACG 204964 >seq12 Length=708323 Score = 109 bits (120), Expect = 9e-18 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| | || |||||||| || | ||||||||| Sbjct 538884 CTGGTCGACATAGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTG-- 538827 Query 2073600 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG 2073657 || | ||||||||||| || | ||| ||| | ||||| | ||| | | | Sbjct 538826 CTGGTACCGTTGGTGCCAGCAATATAGCTGCCAGTAGCGCGAATACGGTGGACATTGAGG 538767 Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 ||||| || ||||| | |||||| || | ||||| | ||||| || |||||||| ||| Sbjct 538766 CCGATACCACCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCC 538707 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 || || ||| |||||||||| | || ||||| || Sbjct 538706 TCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGA 538669 Score = 95.1 bits (104), Expect = 2e-13 Identities = 169/241 (70%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||| || |||||||||| ||||||| | |||| || |||||||||||||| Sbjct 540284 TGGTCGACAGTGAACTGGATGGGAGCAGCGGCAGCCTGGGTACGGAGATAGTACATGCCA 540225 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCG-- 2069368 |||||||| ||| | ||| || | |||||| || ||||| || | | ||| Sbjct 540224 GTCTTGAGACCGAGCTTCCAACCGGCGAAGTGCATGGAGGTGAT---CTTGCCCATCGTA 540168 Query 2069369 GGACGGCACA-GTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| || || | |||||| ||||| ||| |||| ||| | ||||| || Sbjct 540167 GGATCCTTCATGTGAATGTTGAGGGACTGCGACTGATCGATGAAGGCACCACGGTCAGCA 540108 Query 2069428 GCCAT---GTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484 ||||| | ||||||| |||| | || | |||||| ||||||||| | || |||||| Sbjct 540107 GCCATCTGGACGATGGT-ACGC--TGAGAGAGCTCCCAGACGGTCTTGTAGAGCGCCTTG 540051 Query 2069485 A 2069485 | Sbjct 540050 A 540050 >seq16 Length=571565 Score = 87.8 bits (96), Expect = 3e-11 Identities = 133/185 (72%), Gaps = 7/185 (4%) Strand=Plus/Minus Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 249257 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 249198 Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427 ||||||||||||| | | ||||| |||||| ||| | | ||||| | || Sbjct 249197 GGTAGGCGCGCATGATGA--TGCAGAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 249143 Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487 ||| ||| || | ||||||||| || | || ||||| || || || ||||| | Sbjct 249142 CAGGCGTTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATGGAGCAAGGGCCGACCAT 249083 Query 2175488 CACCA 2175492 |||| Sbjct 249082 GACCA 249078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916125771247826