Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq63 123 2e-23 seq125 114 8e-21 seq22 89.7 3e-13 >seq63 Length=225829 Score = 123 bits (136), Expect = 2e-23 Identities = 145/193 (75%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| || || ||||| |||||||||| Sbjct 138091 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 138032 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || ||||| || Sbjct 138031 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGAC--AT- 137975 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| ||| || |||||| || | ||| |||||||| |||||||||||||| Sbjct 137974 -TGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTG 137916 Query 34964 ACAAAGATCTGCA 34976 || ||| ||||| Sbjct 137915 ACGAAG--CTGCA 137905 >seq125 Length=94255 Score = 114 bits (126), Expect = 8e-21 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 36371 CAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACCGTC 36312 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 36311 CTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTC 36252 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || || || | ||||||| || | || || || | || | Sbjct 36251 CTGGATCTTCGACTTCAC----GTTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGA 36196 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| ||||| ||||| || ||||||||||| Sbjct 36195 TAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||| ||||| || ||||| ||| |||| |||| Sbjct 35859 AGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGGCCATCT 35800 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| ||||||||||| || || |||||||| | || | || |||||||| Sbjct 35799 TCCAACTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 35740 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| ||| |||||| Sbjct 35739 TGGATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCAAGGGTGATGGTC 35680 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 35679 TTGCCGGTGA 35670 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||||||||||||| ||||| ||||| || ||| |||| | || Sbjct 36142 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 36083 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || |||||||| | || | |||||||| || Sbjct 36082 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 36023 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| | |||||| || | ||| || Sbjct 36022 TGGATCTTCGACTTGAC--AT--TGTCGATGGTGTCAGACGACTCGACCTCGAGGGTGAT 35967 Query 34942 GGTCTTTCCCGT 34953 |||||| || || Sbjct 35966 GGTCTTGCCAGT 35955 >seq22 Length=487495 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||| ||||||||| ||||| || ||||| || |||| |||| Sbjct 64063 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCC 64004 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| |||| || |||||||| | || | ||||||||||| Sbjct 64003 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 63945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688298721946