Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq95 154 2e-31 seq12 87.8 3e-11 seq40 86.0 9e-11 >seq95 Length=147769 Score = 154 bits (170), Expect = 2e-31 Identities = 240/337 (71%), Gaps = 11/337 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| || ||||| || ||||| || |||||| |||| | Sbjct 15015 GATCTGGCAGATGTAC-AAGAAGGCTGAAGCCTCTTTCTGGACGGCTGAGGAGATCGATC 14957 Query 1455835 TCGGCGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 || | ||| | ||||| | ||| | | |||||| |||||| ||||| Sbjct 14956 TCTCCAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGACGATGAGCGCTTCTTCAT 14899 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | ||||||||||| ||| ||||||||| ||||||||||| ||||||||| | || Sbjct 14898 CTCCCACGTCCTCGC-TTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTCG 14840 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 || || | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 14839 AGCGTTTCAGCTCCGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCA 14780 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-C 1456068 || || ||||| ||||| || |||||||| ||||| |||||||||||| | | || | Sbjct 14779 TGATGGAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTAGCGAGC 14720 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACA 1456105 || | | || || |||| || ||||||||||| Sbjct 14719 CCAGGC-AGCGCAACTACCTGTTCAACGCCATCGACA 14684 Score = 149 bits (164), Expect = 9e-30 Identities = 191/258 (74%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| ||||||||| || |||||||| ||||| ||| || | || || | Sbjct 14359 AGAAGATCATCACCGAGGCCGTAGATATCGAGAAGGAGTTCCTCACGGATGCCCTTCCCG 14300 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 | || ||| ||||||||||||||| || ||| |||||||||||| | || ||||| || Sbjct 14299 TCGCTCTCCTCGGCATGAACGCCA-ATCTTATGCGCCAGTACATTG-AGTTCGTCGCAGA 14242 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||||||||| | ||| || ||| | ||||| |||| | ||||||| ||| | Sbjct 14241 CCGCCTGCTGGTGGCACTGGGCAAC-AAGAAGTTCTACAACTCCACCAACCCCTTCGACT 14183 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756 |||||| |||||||| | |||||||||||||| |||||| |||| ||| || | Sbjct 14182 TCATGGAGAACATCTCGCTTAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACT 14123 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||| || |||| Sbjct 14122 ACCAGAAGGCGGGTGTCA 14105 >seq12 Length=708323 Score = 87.8 bits (96), Expect = 3e-11 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 259931 CTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAG 259990 ||||| || ||||| || || || ||| | || ||||| || | ||||||||| Sbjct 538633 CTCTTCAACGCCGGTACTCCCAAGCCTCAGCTGGCTTCCTGCTTCCTCATCGACATGAAG 538692 Query 259991 GCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCG 260050 | || || ||||| ||||| || || || ||| ||||| | || |||||| | Sbjct 538693 GAGGACAGCATTGAGGGTATCTACGATACCCTGAAGACCTGCGCCATGATTTCCAAGACC 538752 Query 260051 GCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGC 260110 ||||| || ||||| | | ||| | ||||| | ||| ||| | || ||| Sbjct 538753 GCCGGTGGTATCGGCCTCAATGTCCACCGTATTCGCGCTACTGGCAGCTATATTGCTGGC 538812 Query 260111 ACCAACGG--CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGC 260168 |||||||| |||| ||||||||| | || ||||| || || | ||| |||| || | Sbjct 538813 ACCAACGGTACCAG--CAACGGCCTCATTCCTATGCTCCGTGTGTACAACAACACCGCCC 538870 Query 260169 GCTACGTCGACCAG 260182 |||| ||||||||| Sbjct 538871 GCTATGTCGACCAG 538884 >seq40 Length=306130 Score = 86.0 bits (94), Expect = 9e-11 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || |||||| |||| |||||| |||| ||||||||||| || |||||| | |||||| Sbjct 260118 GCCGACCTGATCACCGTCGGCGCCATCGGCGCGCGCACCACTGAAAGCCAGCTCCACCGC 260059 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 ||| | || || | ||| | | ||| | || ||||| ||| ||||||||||| | | Sbjct 260058 GAGTTAGCATCCGGCCTGTCCTTTCCCGTCGGATTCAAGAACGGCACCGACGGCTCCTT- 260000 Query 165870 GCGACG--GCCCTCGATGCC 165887 ||||| ||| |||| ||| Sbjct 259999 -CGACGTCGCCATCGACGCC 259981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177701823615708