Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq95 154 2e-31
seq12 87.8 3e-11
seq40 86.0 9e-11
>seq95
Length=147769
Score = 154 bits (170), Expect = 2e-31
Identities = 240/337 (71%), Gaps = 11/337 (3%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| || ||||| || ||||| || |||||| |||| |
Sbjct 15015 GATCTGGCAGATGTAC-AAGAAGGCTGAAGCCTCTTTCTGGACGGCTGAGGAGATCGATC 14957
Query 1455835 TCGGCGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCAT 1455889
|| | ||| | ||||| | ||| | | |||||| |||||| |||||
Sbjct 14956 TCTCCAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGACGATGAGCGCTTCTTCAT 14899
Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949
| ||||||||||| ||| ||||||||| ||||||||||| ||||||||| | ||
Sbjct 14898 CTCCCACGTCCTCGC-TTTCTTCGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTCG 14840
Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009
|| || | |||||||| | || ||||| || | || ||||| |||||||||
Sbjct 14839 AGCGTTTCAGCTCCGAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCA 14780
Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-C 1456068
|| || ||||| ||||| || |||||||| ||||| |||||||||||| | | || |
Sbjct 14779 TGATGGAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTAGCGAGC 14720
Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACA 1456105
|| | | || || |||| || |||||||||||
Sbjct 14719 CCAGGC-AGCGCAACTACCTGTTCAACGCCATCGACA 14684
Score = 149 bits (164), Expect = 9e-30
Identities = 191/258 (74%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577
|| |||||||| ||||||||| || |||||||| ||||| ||| || | || || |
Sbjct 14359 AGAAGATCATCACCGAGGCCGTAGATATCGAGAAGGAGTTCCTCACGGATGCCCTTCCCG 14300
Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637
| || ||| ||||||||||||||| || ||| |||||||||||| | || ||||| ||
Sbjct 14299 TCGCTCTCCTCGGCATGAACGCCA-ATCTTATGCGCCAGTACATTG-AGTTCGTCGCAGA 14242
Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697
||||||||| | ||| || ||| | ||||| |||| | ||||||| ||| |
Sbjct 14241 CCGCCTGCTGGTGGCACTGGGCAAC-AAGAAGTTCTACAACTCCACCAACCCCTTCGACT 14183
Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756
|||||| |||||||| | |||||||||||||| |||||| |||| ||| || |
Sbjct 14182 TCATGGAGAACATCTCGCTTAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACT 14123
Query 1456757 ACGCCAAGGCCGGCGTCA 1456774
|| ||||| || ||||
Sbjct 14122 ACCAGAAGGCGGGTGTCA 14105
>seq12
Length=708323
Score = 87.8 bits (96), Expect = 3e-11
Identities = 173/254 (68%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 259931 CTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAG 259990
||||| || ||||| || || || ||| | || ||||| || | |||||||||
Sbjct 538633 CTCTTCAACGCCGGTACTCCCAAGCCTCAGCTGGCTTCCTGCTTCCTCATCGACATGAAG 538692
Query 259991 GCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCG 260050
| || || ||||| ||||| || || || ||| ||||| | || |||||| |
Sbjct 538693 GAGGACAGCATTGAGGGTATCTACGATACCCTGAAGACCTGCGCCATGATTTCCAAGACC 538752
Query 260051 GCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGC 260110
||||| || ||||| | | ||| | ||||| | ||| ||| | || |||
Sbjct 538753 GCCGGTGGTATCGGCCTCAATGTCCACCGTATTCGCGCTACTGGCAGCTATATTGCTGGC 538812
Query 260111 ACCAACGG--CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGC 260168
|||||||| |||| ||||||||| | || ||||| || || | ||| |||| || |
Sbjct 538813 ACCAACGGTACCAG--CAACGGCCTCATTCCTATGCTCCGTGTGTACAACAACACCGCCC 538870
Query 260169 GCTACGTCGACCAG 260182
|||| |||||||||
Sbjct 538871 GCTATGTCGACCAG 538884
>seq40
Length=306130
Score = 86.0 bits (94), Expect = 9e-11
Identities = 104/140 (74%), Gaps = 4/140 (3%)
Strand=Plus/Minus
Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809
|| |||||| |||| |||||| |||| ||||||||||| || |||||| | ||||||
Sbjct 260118 GCCGACCTGATCACCGTCGGCGCCATCGGCGCGCGCACCACTGAAAGCCAGCTCCACCGC 260059
Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869
||| | || || | ||| | | ||| | || ||||| ||| ||||||||||| | |
Sbjct 260058 GAGTTAGCATCCGGCCTGTCCTTTCCCGTCGGATTCAAGAACGGCACCGACGGCTCCTT- 260000
Query 165870 GCGACG--GCCCTCGATGCC 165887
||||| ||| |||| |||
Sbjct 259999 -CGACGTCGCCATCGACGCC 259981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177701823615708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |