Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq14 102 6e-17 >seq14 Length=610896 Score = 102 bits (112), Expect = 6e-17 Identities = 224/333 (67%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 || ||||||||| |||| ||||||| ||| ||||| || || || ||| | || | Sbjct 548527 AACGGTCCTGAAGTCTTGAATAAATTTGTTGGTCAGTCAGAGGAGAATATCCGGAAGCTC 548586 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 || || ||||| || | || || ||| | |||||| | | || ||||| ||||| Sbjct 548587 TTCGCCGACGCGGAGAAGGAGCAGAAA-GAGAAGGGCGACGAGAGCGGCTTGCATATTAT 548645 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CTGGTGTA---AA 19610 || | ||||| | || || | || ||||| |||||| |||||| | Sbjct 548646 CATCTTCGATGAGCTTGATGCTGTGTGCAAGCAGAGAGGTAGCGGTGCTGGTGGCGGCAC 548705 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 |||||| ||||| ||||||||| ||||| |||| ||| | |||||||| | || || Sbjct 548706 TGGAGTGGGTGACAGTGTTGTCAACCAACTTTTGTCGAAACTCGACGGTGTCGAGCAGCT 548765 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 ||| || || | | ||||||||||| ||| | | || | || || ||| | || Sbjct 548766 GAACAACATCCTTCTCATTGGCATGACCAATCGGATCGACATCATCGATGAAGCCCTCTT 548825 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAAT 19763 | || || || |||||||| || | ||||| Sbjct 548826 GAGGCCTGGGCGCTTGGAAATCCAGCTTGAAAT 548858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450506909670