Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq95 109 2e-18 seq12 89.7 2e-12 >seq95 Length=147769 Score = 109 bits (120), Expect = 2e-18 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 443708 GCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCA 443767 ||| || |||||||||| | ||||| || | || || || || | | || || |||| Sbjct 14559 GCGCCTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGG-ATCCTTCGCTTCCA 14501 Query 443768 TCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCA 443827 |||||||| |||| |||||||| || |||| |||||| || || |||||| || ||| Sbjct 14500 TCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTAACGAGCTCATCT 14441 Query 443828 GTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| ||||||||| ||||| ||||||||| || || || Sbjct 14440 CTCGTGACGAGGGTATGCATACCGACTTCGCTTGCCTGCT 14401 >seq12 Length=708323 Score = 89.7 bits (98), Expect = 2e-12 Identities = 213/319 (67%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||| | || || ||| ||||||||| ||||||| || ||||| ||||| || || || Sbjct 538830 CGGCCTCATTCCTATGCTCCGTGTGTACAACAACACCGCCCGCTATGTCGACCAGGGTGG 538889 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 | ||| || || || || ||| |||| ||||| ||||||||||| ||||| | | Sbjct 538890 CAACAAGCGTCCCGGTGCATTCGCCATTTACCTCGAGCCGTGGCATGCCGATGTCTTCAG 538949 Query 255091 GTTTTTACTGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTA 255147 || | || |||| ||||| ||| | || ||| | ||| || ||| | | Sbjct 538950 CTTCCT--TGACCTCCG-CAAGAACCACGGAAAGGAAGAGGTTCGCGCTCGTGACCTGTT 539006 Query 255148 CACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAG 255207 |||| | ||| | |||||| || ||| || || |||| ||| ||||||| Sbjct 539007 TTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAACAGAACGGCACCTGGAC 539066 Query 255208 CCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAA 255267 || ||||| |||||| | || ||||| | |||| | || |||||||| || Sbjct 539067 TCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGACGAGTTCGAGGC 539126 Query 255268 ACTGTATCTGGAGTACGAG 255286 ||||| | |||||||| Sbjct 539127 TCTGTACGAGCAGTACGAG 539145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588312922470630