Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12 165 1e-35 seq95 111 2e-19 seq3 96.9 4e-15 >seq12 Length=708323 Score = 165 bits (182), Expect = 1e-35 Identities = 815/1279 (64%), Gaps = 30/1279 (2%) Strand=Plus/Minus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCAT 118252 ||||| ||||| |||||||| ||| | |||||| | | ||| | ||||| || ||||| Sbjct 539885 GTGTAAGGCTCGAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTAGAGGCAGTAGGCAT 539827 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 ||| || | ||| ||| ||| |||| ||| | | | |||| || ||| Sbjct 539826 GGGCGCAACGAGCAGGGAGTTGCGGACACCGTGCTGGGCGACCTCAGCCTTCAGGCTGTC 539767 Query 118313 CCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||| | | | || | | || | |||||| ||| |||| || || |||||| Sbjct 539766 CCAGTCCCACAGGTCAG--TGGGGGCCTTGTTCCACATGTCATACTGCAGAATGCCTTGG 539709 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC---GGAG 118427 || || || |||| || |||||||| ||||| | || || | || |||| Sbjct 539708 GAAGCGGGGCTACCCTGGAACGTCTCATAGGGGCCGTGTTGCTTGGCGAGCTCAATGGAG 539649 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 || || || ||||| || || || || || || || || | ||||||| Sbjct 539648 ---GCAGTAAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGGTGCTTGGCC 539592 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 || ||||| || | | || | || |||| |||||||| | |||||| Sbjct 539591 TCAGGAGAATCGAAGGGCATACGAAGAGCCAGGAAAGCATCGGCGAGACCGTTGACACCA 539532 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTC 118607 | |||| |||||||| | ||| || | ||| ||| | |||||| || || Sbjct 539531 ACAGCAATGGGGCGATGGCGCATGTTGCTCCTCCTAGCCTCCGGCACGGGGTAGTGGTTG 539472 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 | ||||| | | | || || || ||| || || | |||| ||||||||||| | | Sbjct 539471 ATGTCGATGATCTTGTTCAGGTTCTTGACGAGCACTTGAGTGACATCATGAAGCTTCTTG 539412 Query 118668 TAATCA-AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | ||| ||||| | | ||| |||||||| | ||||||| || | || || || || Sbjct 539411 AAGTCATAAACTCCCTG-CTCGACATTGACAAAGGTAGGAAGTGCCAGGGATGCAAGGTT 539353 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 || |||| | |||||| |||||||||| | ||| || ||| | ||| || || Sbjct 539352 GCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACAATCTCGCAGCAGAGGTTGGAGCT 539293 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 |||||||| | |||||| || || ||| ||| || |||||||| ||||| Sbjct 539292 GCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCAT 539233 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTG 118905 | | || | || ||||| || | || ||||| || | ||||| | || | || Sbjct 539232 GAAGGGGTTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTG-GGCAC 539174 Query 118906 GCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 | || || | | || ||||| | |||||||| ||| || || || ||||| | Sbjct 539173 GAACGGTCTCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAGCCTCGAACTCGT 539114 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 | || | | || | || || || || | ||||| | |||| ||| || Sbjct 539113 CGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTCCAGGTGCCGT 539054 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 || || || |||||||||||||| || |||||||| || || | || || || ||| Sbjct 539053 TCTGTTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAAAACAGGTCACGAG 538994 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 |||| | ||||| | || || || || | || | ||| | || ||| || | Sbjct 538993 CGCGAACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCAAGGAAGCTGAAGACATCGGCAT 538934 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 119202 ||||||| || ||||| | |||| || || ||| ||| |||||| |||| Sbjct 538933 GCCACGGCTCGAGGTAAATGGCGAATGCACCGGGACGCTTGTTGCCACCCTGGTCGACAT 538874 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG--CCATT 119260 | | || ||| ||| | ||||| ||||| ||||||| || | | ||| || || Sbjct 538873 AGCGGGCGGTGTTGTTGTACACACGGAGCATAGGAATGAGGCCGTTG--CTGGTACCGTT 538816 Query 119261 TGTCCCCCGAATACGAGACT--TATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || |||| || || | | || | | | ||||| | | || ||||| Sbjct 538815 GGTGCCAGCAATA-TAG-CTGCCAGTAGCGCGAATACGGTGGACATTGAGGCCGATACCA 538758 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || || ||| || || ||||| | | || | ||||||| || || || | Sbjct 538757 CCGGCGGTCTTGGAAATCATGGCGCAGGTCTTCAGGGTATCGTAGATACCCTCAATGCTG 538698 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || |||| | |||||||||||||| | || |||||| |||| ||||| |||||| Sbjct 538697 TCCTCCTTCATGTCGATGAGGAAGCAGGAAGCCAGCTGAGGCTTGGGAGTACCGGCGTTG 538638 Query 119439 AAGAGAGTTGGTGTCGCGT 119457 |||||| | |||||||| Sbjct 538637 AAGAGA---GCTGTCGCGT 538622 >seq95 Length=147769 Score = 111 bits (122), Expect = 2e-19 Identities = 348/525 (66%), Gaps = 32/525 (6%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 ||||| ||||| ||||||||||||||||| ||||| |||| |||| ||| |||||||| Sbjct 14122 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTT-AAGCGAGATGTTCTCCAT 14180 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGCTGGC-ACTCCAATCTGTTTGAG 129840 || || || ||||| | ||||| | | ||| || | | | | | | || Sbjct 14181 GAAGTCGAAGGGGTTGGTGGAGTTGTAGAACTTCTTGTTGCCCAGTGCCACC------AG 14234 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 || || || | |||| |||||||||||| ||| | || |||||| |||| ||| Sbjct 14235 CAGGCGGTCTGCGACGAACTCAATGTACTGGCGCATAAGATTGGCGTTCATGCCGAGGAG 14294 Query 129901 -GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA 129959 | || || || || ||| || |||| ||||||| || || || || || | || Sbjct 14295 AGCGACG-GGAAGGGCATCCGTGAGGAACTCCTTCTCGATATCTACGGCCTCGGTGATGA 14353 Query 129960 TGGCGTGAATGGTCTCCGTGCCAGG--TCTA-TTGCGCAAAGT-CTTGAAGAGTTCCACG 130015 | | | || || | || || || | ||| | || | ||| || || | Sbjct 14354 TCTTCTCGACGGCATCGGGGCTGGGCTTCGACTTG----ATGTGCGAGAACAG---CAGG 14406 Query 130016 ---GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 || || || || | |||||||||||| |||||||| || || ||||| ||| Sbjct 14407 CAAGCGAAGTCGGTATGCATACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTGAGA 14466 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || |||||||| || |||||||||| |||||| || | | || || ||| ||||||| Sbjct 14467 CCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCACTGAAGAAG 14526 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || ||||| ||| ||| || || | || ||| || || | || | |||| || Sbjct 14527 ATACCCTCGACAGCCGCAAAAGCGATCAGGCGCGATGCGAAAG-TCGAGTTCTTGTCGCA 14585 Query 130193 -AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 | ||| || ||||| | ||||| |||| |||||| || || Sbjct 14586 GATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATACAAGGAAC 14630 >seq3 Length=900425 Score = 96.9 bits (106), Expect = 4e-15 Identities = 217/321 (68%), Gaps = 4/321 (1%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAAC 14292 ||| |||| ||||| |||||||| ||||| | ||| || || | | | || || Sbjct 850780 CTTGCCGATAGCGTCGATTTCATCAATGAAGATGATGCAGGGGGTACTCTTCCGCGCTGT 850839 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | |||| | |||||| ||||| || ||| ||||| || ||||||||||| || | || Sbjct 850840 TGCAAACAAATCTCGTACTCTGGAGGGACCAACACCGACGAACATCTCCACGAACTCGGA 850899 Query 14353 GGCG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | || ||| | || |||||| || | |||||||| || |||| || || || | Sbjct 850900 GCCGCTAACGCT-GAAGAAGGGCACCTGGGATTCACCGGCAGTGGCCTTAGCAAGCAGCG 850958 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTG 14470 |||| || || || || || | ||| | ||| ||||| || || ||||||| | | Sbjct 850959 TCTTGCCAGTACCAGGAGGACCAGAGAGGATGGCGCCACGAGGAATTTTGGCACCAAGTT 851018 Query 14471 CCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCG 14530 | | || | |||||| || |||||| |||| ||| | ||| | |||||| Sbjct 851019 TCTGA-TACACTCCAGGTTCCTTGAGGAAGCTGACGAATTCCATGATTTCTTGCTTCGCC 851077 Query 14531 GCGTCGATGCCTTCAACGTCA 14551 |||| || || |||||||| Sbjct 851078 TCGTCCATCCCGGCAACGTCA 851098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618426433681040