Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq12 127 2e-24
seq95 120 4e-22
seq3 89.7 6e-13
>seq12
Length=708323
Score = 127 bits (140), Expect = 2e-24
Identities = 351/533 (66%), Gaps = 15/533 (3%)
Strand=Plus/Plus
Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------G 104593
||||| ||||| || || | ||| ||| || |||||||| | || | ||| |
Sbjct 538837 ATTCCTATGCTCCGTGTGTACAACAACACCGCCCGCTATGTCGACCAGGGTGGCAACAAG 538896
Query 104594 CGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTC 104653
|||| | || |||| | || || ||||| ||||| || ||| || | |||
Sbjct 538897 CGTCCCGGTGCAT---TCGCCATTTACCTCGAGCCGTGGCATGCCGATGTCTTCAGCTTC 538953
Query 104654 CTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCG 104711
||||| | || ||||| || | || |||| |||| | || || || || | ||
Sbjct 538954 CTTGACCTCCGCAAGAACCACGGAAAGGAAGAGGTTCGCGCT--CGTGACCTGTTTTACG 539011
Query 104712 CTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCT 104771
|||| ||||| || ||||||||||||||| | || || ||| |||| ||| ||||
Sbjct 539012 CTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAACAGAACGGCACCTGGACTCTGA 539071
Query 104772 TTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTT 104831
| || || || || |||||||| |||| | | || || ||||| || || || |
Sbjct 539072 TGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGACGAGTTCGAGGCTCTGT 539131
Query 104832 ACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGG 104890
|| |||||||| | || ||||||| || ||| || | || | || | | |||
Sbjct 539132 ACGAGCAGTACGAGAAGGAGGGTCGGGGTCGTGAGACCGTTCGTGC-CCAGAAGCTCTGG 539190
Query 104891 AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCC 104950
| || ||||| || |||| ||||||||| | || | |||||| ||||| ||| |
Sbjct 539191 TACGCCATTCTTGAGGCTCAGGTCGAGACTGGCAACCCCTTCATGCTGTACAAGGACCAC 539250
Query 104951 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACA 105010
|| |||| ||||| || || ||||| | || ||| || ||||| |||||
Sbjct 539251 TGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCTCCAACCTCTGCTGC 539310
Query 105011 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063
|| || | || | || | | |||||| ||||| || ||||| |||||
Sbjct 539311 GAGATTGTCGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAACCTTGCATC 539363
>seq95
Length=147769
Score = 120 bits (132), Expect = 4e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGC 94792
|||||| ||||| | ||||| || || ||||| || ||| | || |||| | |
Sbjct 14631 AGTTCCTTGTATCAAGAAGAAGGCCGACTGGGCCCTGCGCTGGATCTGCGACAAGAACTC 14572
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
| | || || ||| || |||| |||||| ||| ||||||||||||||| ||| |
Sbjct 14571 GA-CTTTCGCATCGCGCCTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGAT 14513
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
||||| | || | ||||| |||||||| || |||||||| |||||| ||||| |
Sbjct 14512 CCTTCGCTTCCATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTA 14453
Query 94913 ACGAGCTTATCTCTCGTGACGAGGG 94937
||||||| |||||||||||||||||
Sbjct 14452 ACGAGCTCATCTCTCGTGACGAGGG 14428
>seq3
Length=900425
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
|| || || ||||||||||||| |||||| || | | | || || | |||| | |
Sbjct 850790 GCGTCGATTTCATCAATGAAGATGATGCAGGGGGTACTCTTCCGCGCTGTTGCAAACAAA 850849
Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACA 9822
|| ||||| | || || ||||| || ||||||||||| || | | | || |||
Sbjct 850850 TCTCGTACTCTGGAGGGACCAACACCGACGAACATCTCCACGAACTCGGAGCCGCTAACG 850909
Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882
| || |||||| || | |||||||| ||| |||| || || || ||||| || ||
Sbjct 850910 CT-GAAGAAGGGCACCTGGGATTCACCGGCAGTGGCCTTAGCAAGCAGCGTCTTGCCAGT 850968
Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928
||| || ||| | ||||| ||| || || ||||| ||||| |||
Sbjct 850969 ACCAGGAGGACCAGAGAGGATGGCGCCACGAGGAATTTTGGCACCA 851014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583252532278160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |