Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12 127 2e-24 seq95 120 4e-22 seq3 89.7 6e-13 >seq12 Length=708323 Score = 127 bits (140), Expect = 2e-24 Identities = 351/533 (66%), Gaps = 15/533 (3%) Strand=Plus/Plus Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------G 104593 ||||| ||||| || || | ||| ||| || |||||||| | || | ||| | Sbjct 538837 ATTCCTATGCTCCGTGTGTACAACAACACCGCCCGCTATGTCGACCAGGGTGGCAACAAG 538896 Query 104594 CGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTC 104653 |||| | || |||| | || || ||||| ||||| || ||| || | ||| Sbjct 538897 CGTCCCGGTGCAT---TCGCCATTTACCTCGAGCCGTGGCATGCCGATGTCTTCAGCTTC 538953 Query 104654 CTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCG 104711 ||||| | || ||||| || | || |||| |||| | || || || || | || Sbjct 538954 CTTGACCTCCGCAAGAACCACGGAAAGGAAGAGGTTCGCGCT--CGTGACCTGTTTTACG 539011 Query 104712 CTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCT 104771 |||| ||||| || ||||||||||||||| | || || ||| |||| ||| |||| Sbjct 539012 CTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAACAGAACGGCACCTGGACTCTGA 539071 Query 104772 TTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTT 104831 | || || || || |||||||| |||| | | || || ||||| || || || | Sbjct 539072 TGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGACGAGTTCGAGGCTCTGT 539131 Query 104832 ACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGG 104890 || |||||||| | || ||||||| || ||| || | || | || | | ||| Sbjct 539132 ACGAGCAGTACGAGAAGGAGGGTCGGGGTCGTGAGACCGTTCGTGC-CCAGAAGCTCTGG 539190 Query 104891 AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCC 104950 | || ||||| || |||| ||||||||| | || | |||||| ||||| ||| | Sbjct 539191 TACGCCATTCTTGAGGCTCAGGTCGAGACTGGCAACCCCTTCATGCTGTACAAGGACCAC 539250 Query 104951 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACA 105010 || |||| ||||| || || ||||| | || ||| || ||||| ||||| Sbjct 539251 TGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCTCCAACCTCTGCTGC 539310 Query 105011 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 || || | || | || | | |||||| ||||| || ||||| ||||| Sbjct 539311 GAGATTGTCGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAACCTTGCATC 539363 >seq95 Length=147769 Score = 120 bits (132), Expect = 4e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGC 94792 |||||| ||||| | ||||| || || ||||| || ||| | || |||| | | Sbjct 14631 AGTTCCTTGTATCAAGAAGAAGGCCGACTGGGCCCTGCGCTGGATCTGCGACAAGAACTC 14572 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | | || || ||| || |||| |||||| ||| ||||||||||||||| ||| | Sbjct 14571 GA-CTTTCGCATCGCGCCTGATCGCTTTTGCGGCTGTCGAGGGTATCTTCTTCAGTGGAT 14513 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 ||||| | || | ||||| |||||||| || |||||||| |||||| ||||| | Sbjct 14512 CCTTCGCTTCCATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTCACTTTCTCTA 14453 Query 94913 ACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||| ||||||||||||||||| Sbjct 14452 ACGAGCTCATCTCTCGTGACGAGGG 14428 >seq3 Length=900425 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || || || ||||||||||||| |||||| || | | | || || | |||| | | Sbjct 850790 GCGTCGATTTCATCAATGAAGATGATGCAGGGGGTACTCTTCCGCGCTGTTGCAAACAAA 850849 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACA 9822 || ||||| | || || ||||| || ||||||||||| || | | | || ||| Sbjct 850850 TCTCGTACTCTGGAGGGACCAACACCGACGAACATCTCCACGAACTCGGAGCCGCTAACG 850909 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || |||||| || | |||||||| ||| |||| || || || ||||| || || Sbjct 850910 CT-GAAGAAGGGCACCTGGGATTCACCGGCAGTGGCCTTAGCAAGCAGCGTCTTGCCAGT 850968 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||| || ||| | ||||| ||| || || ||||| ||||| ||| Sbjct 850969 ACCAGGAGGACCAGAGAGGATGGCGCCACGAGGAATTTTGGCACCA 851014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583252532278160