Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq125 111 5e-19 seq4 93.3 1e-13 seq84 89.7 2e-12 >seq125 Length=94255 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || || || Sbjct 36389 CATACCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTC 36330 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || || ||||| ||||| ||||| || || Sbjct 36329 CGAGAGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGG 36270 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || ||||| || | ||| || | ||| Sbjct 36269 CGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTC 36210 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | |||||||| || || || || || || |||||||| Sbjct 36209 CACCTCGAGCGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Score = 89.7 bits (98), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||| || || || || || || Sbjct 36161 CATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 36102 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| | || ||||| || || Sbjct 36101 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGG 36042 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || |||||||| || || | || ||||| || || | ||||| | || Sbjct 36041 AGGGATGCCCTCCTTATCCTGGATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTC 35982 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| || || Sbjct 35981 GACCTCGAGGGTGATGGTCTTGCCAGT 35955 >seq4 Length=882551 Score = 93.3 bits (102), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||| ||||| | || || ||| || || | ||||||||||||||||| || || Sbjct 561910 CGTGGGACACCGAGCGTGACGTTC---TTCGAGGACACACCAGCAAAGTGGAAGGTGTTC 561966 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||||||||||| || ||||| |||| || |||||||| ||| Sbjct 561967 AGTGTCATCTGTGTGGCAGGCTCACCAATCGATTGCGCGGCAAGCACACCAACCATCTCT 562026 Query 377578 CCAGGATTGACAATAGC 377594 |||||| |||| || || Sbjct 562027 CCAGGACTGACGATCGC 562043 >seq84 Length=178728 Score = 89.7 bits (98), Expect = 2e-12 Identities = 196/292 (67%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | || || || ||||| || || || || ||| | | || || || || || Sbjct 15709 GCCGTTGTCACGGTCCCGGCCTACTTCAACGACGCTCAGAGAGCCGCTACCAAGGACGCC 15650 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| || | || ||||| | | | || || |||||||| || || | Sbjct 15649 GGTACCATTGCCGGTCTGAACGTTCTCCGTGTTGTCAACGAGCCCACTGCGGCCGCTCTG 15590 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa----aTATTCTTATTTTTGATTT 349785 || || || || || || | | |||| |||| | | || | | | || | Sbjct 15589 GCTTACGGCCTGGACAAGAAGGATGAC-AAGACCGAGCGCCAGATCATCGTCTACGACCT 15531 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 |||||||||||||| ||||| || | || || | || ||||| |||| || || | Sbjct 15530 TGGTGGTGGTACTTTCGATGTCTCCATTCTCACTGTCGACGAGGGTGTTTTCGAGGTCCA 15471 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTC 349897 || ||||||||||| || || |||||||| || |||||||| || ||| || Sbjct 15470 GGCTACTGCTGGTGACACTCACCTTGGTGGTGAGGATTTTGACAACCGTGTC 15419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515232384300602