Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 172 6e-38 seq95 95.1 1e-14 >seq12 Length=708323 Score = 172 bits (190), Expect = 6e-38 Identities = 339/498 (68%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 53286 CGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGG 53345 || || | || |||||||| ||||| | |||||| || | ||||||||| | | Sbjct 538625 CGACAGCTCTCTTCAACGCCGGTACTCCCAAGCCTCAGCTGGCTTCCTGCTTCCTCATCG 538684 Query 53346 CGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCT 53405 |||||||| ||| || || || |||||||| || || ||| || ||| || | Sbjct 538685 ACATGAAGGAGGACAGCATTGAGGGTATCTACGATACCCTGAAGACCTGCGCCATGATTT 538744 Query 53406 CCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC--CGTGCGAACGGCACACC 53463 ||||| | ||||||||||| || | || || | ||| || || | |||| Sbjct 538745 CCAAGACCGCCGGTGGTATCGGCCTCAA-TG-TCCACCGTATTCGCGCTACTGGCAGCTA 538802 Query 53464 AATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAA 53523 || || || ||||| | | | || || | ||||||||||| || | |||||| Sbjct 538803 TATTGCTGGCACCAACGGTACCAGCAACGGCCTCATTCCTATGCTCCGTGTGTACAACAA 538862 Query 53524 CACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCT 53583 ||| ||||| || ||| |||||||||| ||||| || | |||||||| ||||| Sbjct 538863 CACCGCCCGCTATGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCATTCGCCATTTACCT 538922 Query 53584 CGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGA 53643 |||||||||||| ||||| | | || || || || || ||| || || | || Sbjct 538923 CGAGCCGTGGCATGCCGATGTCTTCAGCTTCCTTGACCTCCGCAAGAACCACGGAAAGGA 538982 Query 53644 AGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAA 53703 |||| | ||| |||||||||||| ||||||||||| || || ||||||||| | Sbjct 538983 AGAGGTTCGCGCTCGTGACCTGTTTTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCG 539042 Query 53704 GGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGG 53763 || || || ||| ||| ||||||||||| ||||||||||| || || | Sbjct 539043 TGTCGAACAGAACGGCACCTGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGA 539102 Query 53764 TGTCTACGGTGAGGAGTT 53781 |||||||| || ||||| Sbjct 539103 CGTCTACGGCGACGAGTT 539120 Score = 120 bits (132), Expect = 3e-22 Identities = 301/451 (67%), Gaps = 15/451 (3%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||||||||| ||||| ||||| || || || || |||||| | ||| | Sbjct 539803 CGCAACTCCCTGCTCGTTGCGCCCATGCCTACTGCCTCTACCAGTCAGATTCTTGGCTTC 539862 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | ||||| ||| ||||| | | || |||||| Sbjct 539863 AACGAGTGCTTCGAGCCTTACACTTCGAACATTTACTCTCGCCGTGTCTTGGCCGGTGAG 539922 Query 55604 TTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 || || | || ||| | | ||| | ||||||||| | || |||| Sbjct 539923 TTC--CAGG-TCGTCAACCCCTGGCTCCTGAAGGACCTGGTCGACCTCGGTCTGTGGTCG 539979 Query 55661 CCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAG 55714 ||||| |||| || || |||| ||||| ||| ||||| | || | Sbjct 539980 GACCAGATGAAGAACCGCATCATTGCTTCCAACGGC---TCCATCCAGCAAATTCCCAAC 540036 Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 || || |||||| | | ||| ||| || |||||| | | ||| | | Sbjct 540037 ATCCCGGATGACATCAAGGCGCTCTACAAGACCGTCTGGGAGCTCTCTCAGCGTACCATC 540096 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 | | ||| |||||| |||||||| | |||||| ||||| ||||| || ||||| | Sbjct 540097 GTCCAGATGGCTGCTGACCGTGGTGCCTTCATCGATCAGTCGCAGTCCCTCAACATTCAC 540156 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 ||| || ||||| | ||| |||| | | ||| |||||||| ||| |||||| || Sbjct 540157 ATGAAGGATCCTACGATGGGCAAGATCACCTCCATGCACTTCGCCGGTTGGAAGCTCGGT 540216 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||||| || ||||||||||| || |||| Sbjct 540217 CTCAAGACTGGCATGTACTATCTCCGTACCC 540247 >seq95 Length=147769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||||| ||| ||||||| | |||||| ||||||||| Sbjct 14464 AGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCACTGAAG 14523 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCG 74899 ||||| || |||||| |||||| |||| ||||| Sbjct 14524 AAGATACCCTCGACAGCCGCAAAAGCGATCAGGCG 14558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/250 (68%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 75022 TGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGT 75081 |||| || | || ||||| ||||| || ||||| ||| | | |||| | ||| Sbjct 14735 TGTCGATGAGGAGAGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGT 14794 Query 75082 AGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTC 75139 |||| | || ||||| | ||||| || || ||||| || | | | ||||| Sbjct 14795 AGAAGCAGCGAGCCTCGGGGATCTGGACCTCGGAGCTGAAACGCTC--GACAAGGTTCTC 14852 Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199 |||||||||| || ||||||||||| ||||| || || ||| ||| |||||| Sbjct 14853 GTTGACGATGCCATCAGAGGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTC 14912 Query 75200 ATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256 |||||| ||| | |||| ||| || | |||||| | | ||| |||||||| | Sbjct 14913 ATCGTCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCAGC 14972 Query 75257 CGTCCAGAAA 75266 |||||||||| Sbjct 14973 CGTCCAGAAA 14982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208243213200