Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq12 172 6e-38
seq95 95.1 1e-14
>seq12
Length=708323
Score = 172 bits (190), Expect = 6e-38
Identities = 339/498 (68%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 53286 CGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGG 53345
|| || | || |||||||| ||||| | |||||| || | ||||||||| | |
Sbjct 538625 CGACAGCTCTCTTCAACGCCGGTACTCCCAAGCCTCAGCTGGCTTCCTGCTTCCTCATCG 538684
Query 53346 CGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCT 53405
|||||||| ||| || || || |||||||| || || ||| || ||| || |
Sbjct 538685 ACATGAAGGAGGACAGCATTGAGGGTATCTACGATACCCTGAAGACCTGCGCCATGATTT 538744
Query 53406 CCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC--CGTGCGAACGGCACACC 53463
||||| | ||||||||||| || | || || | ||| || || | ||||
Sbjct 538745 CCAAGACCGCCGGTGGTATCGGCCTCAA-TG-TCCACCGTATTCGCGCTACTGGCAGCTA 538802
Query 53464 AATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAA 53523
|| || || ||||| | | | || || | ||||||||||| || | ||||||
Sbjct 538803 TATTGCTGGCACCAACGGTACCAGCAACGGCCTCATTCCTATGCTCCGTGTGTACAACAA 538862
Query 53524 CACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCT 53583
||| ||||| || ||| |||||||||| ||||| || | |||||||| |||||
Sbjct 538863 CACCGCCCGCTATGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCATTCGCCATTTACCT 538922
Query 53584 CGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGA 53643
|||||||||||| ||||| | | || || || || || ||| || || | ||
Sbjct 538923 CGAGCCGTGGCATGCCGATGTCTTCAGCTTCCTTGACCTCCGCAAGAACCACGGAAAGGA 538982
Query 53644 AGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAA 53703
|||| | ||| |||||||||||| ||||||||||| || || ||||||||| |
Sbjct 538983 AGAGGTTCGCGCTCGTGACCTGTTTTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCG 539042
Query 53704 GGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGG 53763
|| || || ||| ||| ||||||||||| ||||||||||| || || |
Sbjct 539043 TGTCGAACAGAACGGCACCTGGACTCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGA 539102
Query 53764 TGTCTACGGTGAGGAGTT 53781
|||||||| || |||||
Sbjct 539103 CGTCTACGGCGACGAGTT 539120
Score = 120 bits (132), Expect = 3e-22
Identities = 301/451 (67%), Gaps = 15/451 (3%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
||||||||||||||||| ||||| ||||| || || || || |||||| | ||| |
Sbjct 539803 CGCAACTCCCTGCTCGTTGCGCCCATGCCTACTGCCTCTACCAGTCAGATTCTTGGCTTC 539862
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| | ||||| ||| ||||| | | || ||||||
Sbjct 539863 AACGAGTGCTTCGAGCCTTACACTTCGAACATTTACTCTCGCCGTGTCTTGGCCGGTGAG 539922
Query 55604 TTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660
|| || | || ||| | | ||| | ||||||||| | || ||||
Sbjct 539923 TTC--CAGG-TCGTCAACCCCTGGCTCCTGAAGGACCTGGTCGACCTCGGTCTGTGGTCG 539979
Query 55661 CCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAG 55714
||||| |||| || || |||| ||||| ||| ||||| | || |
Sbjct 539980 GACCAGATGAAGAACCGCATCATTGCTTCCAACGGC---TCCATCCAGCAAATTCCCAAC 540036
Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774
|| || |||||| | | ||| ||| || |||||| | | ||| | |
Sbjct 540037 ATCCCGGATGACATCAAGGCGCTCTACAAGACCGTCTGGGAGCTCTCTCAGCGTACCATC 540096
Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834
| | ||| |||||| |||||||| | |||||| ||||| ||||| || ||||| |
Sbjct 540097 GTCCAGATGGCTGCTGACCGTGGTGCCTTCATCGATCAGTCGCAGTCCCTCAACATTCAC 540156
Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894
||| || ||||| | ||| |||| | | ||| |||||||| ||| |||||| ||
Sbjct 540157 ATGAAGGATCCTACGATGGGCAAGATCACCTCCATGCACTTCGCCGGTTGGAAGCTCGGT 540216
Query 55895 CTCAAGACGGGTATGTACTATCTGCGGACCC 55925
|||||||| || ||||||||||| || ||||
Sbjct 540217 CTCAAGACTGGCATGTACTATCTCCGTACCC 540247
>seq95
Length=147769
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
|| || ||||| || ||||||||||||| ||| ||||||| | |||||| |||||||||
Sbjct 14464 AGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGATCCACTGAAG 14523
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCG 74899
||||| || |||||| |||||| |||| |||||
Sbjct 14524 AAGATACCCTCGACAGCCGCAAAAGCGATCAGGCG 14558
Score = 84.2 bits (92), Expect = 2e-11
Identities = 170/250 (68%), Gaps = 7/250 (3%)
Strand=Plus/Plus
Query 75022 TGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGT 75081
|||| || | || ||||| ||||| || ||||| ||| | | |||| | |||
Sbjct 14735 TGTCGATGAGGAGAGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGT 14794
Query 75082 AGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTC 75139
|||| | || ||||| | ||||| || || ||||| || | | | |||||
Sbjct 14795 AGAAGCAGCGAGCCTCGGGGATCTGGACCTCGGAGCTGAAACGCTC--GACAAGGTTCTC 14852
Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199
|||||||||| || ||||||||||| ||||| || || ||| ||| ||||||
Sbjct 14853 GTTGACGATGCCATCAGAGGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTC 14912
Query 75200 ATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256
|||||| ||| | |||| ||| || | |||||| | | ||| |||||||| |
Sbjct 14913 ATCGTCGTTGAGACGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCAGC 14972
Query 75257 CGTCCAGAAA 75266
||||||||||
Sbjct 14973 CGTCCAGAAA 14982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547208243213200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |