Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq121 116 3e-21 >seq121 Length=97770 Score = 116 bits (128), Expect = 3e-21 Identities = 235/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 30112 GTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAG 30171 |||| ||||||||| |||| || ||||||||| | ||| | || |||||| | | Sbjct 12197 GTCTGCGGGGTTCCACGCGCTCATGATGATGCGACGGTCATAGGGCTTGTTCTTCAGCTT 12256 Query 30172 GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30231 ||| | ||| |||||||||||| ||| ||||| ||||| | | | |||| Sbjct 12257 GTCAATCACGTCGGCCAGCTGATCCACGCCCTGCCCCGTATAGTCCGTCTTTGCGTCCAC 12316 Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 || || || ||||| || | ||| ||||| ||||| || || || ||||| || || || Sbjct 12317 ATATTCGGCGCCGAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCAAGGTCGCCTTCCTC 12376 Query 30292 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | |||| || ||| |||| | || || | || || ||| ||||||||||||| Sbjct 12377 GCGGTGCGAGAGGCCGACGCTGTCGAGGAACTCGCGAGATCCATTGCCGTCCCAGATCTT 12436 Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411 | || ||| || || || ||| |||| || ||||||||||| ||| || Sbjct 12437 GATGCCGGCCTCCGAAAGAGGCTTTGAGGATGTGATGCCGGCGACGAACCACAACAGTTC 12496 Query 30412 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 30456 | || ||||| | || ||||| | ||| || |||||||| || Sbjct 12497 GGCGACAACGGC--GCGAAGGAAGACACGCTTTGTGGTGAGGAGCGG 12541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406304784536328