Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq125 114 8e-21 seq22 89.7 3e-13 >seq125 Length=94255 Score = 114 bits (126), Expect = 8e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| |||||| ||||| ||| |||||| || ||||| || || || Sbjct 36385 CCACCACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAG 36326 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || |||||||| || || | |||||| ||||||||||| Sbjct 36325 AGAGTGCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 36266 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 36265 ATACCCTCCTTGTCCTGGATCTT 36243 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || ||||| ||||||||||||||| || || || || || || Sbjct 36604 AGACGGAGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGACAGCGTACGA 36545 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || |||||||| || || | |||||| |||||||| || | |||||| Sbjct 36544 CCGTCTTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCC 36485 Query 34609 TTGTCTGTGATCTT 34622 || || |||||| Sbjct 36484 TTATCCTGGATCTT 36471 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||||||||||| || ||||| || || || || || || |||| ||||| || Sbjct 36133 TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGC 36074 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || || || || || ||||| |||||||| || | |||||||| || |||||| Sbjct 36073 TTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTT 36015 >seq22 Length=487495 Score = 89.7 bits (98), Expect = 3e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||| | || || ||| |||||| || ||||| ||||| ||| Sbjct 64078 CCGCCACGCAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 64019 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || || || || || |||||||| |||||||| || Sbjct 64018 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGA 63959 Query 34600 ACTCCCTCCTTGTCTGT 34616 | |||||||||||||| Sbjct 63958 ATGCCCTCCTTGTCTGT 63942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725250240222