Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq121 125 6e-24 >seq121 Length=97770 Score = 125 bits (138), Expect = 6e-24 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 ||||||||||||| ||| | ||| | | ||||| || || ||||| |||| ||| Sbjct 12204 GGGTTCCACGCGCTCATGATGATGCGACGGTCATAGGGCTTGTTCTTCAGCTTGTCAATC 12263 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 |||| |||||| ||| | ||||| |||| |||||||| ||| || || | ||| || Sbjct 12264 ACGTCGGCCAGCTGATCCACGCCCTGCCCCGTATAGTCCGTCTTTGCGTCCAC-ATATTC 12322 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || || ||||||| ||| ||||| |||||||| ||||| | |||||| ||||| || Sbjct 12323 GGCGCCGAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCAAGGTCGCCTTCCTCGCGGTG 12382 Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | || || ||| |||| || || || ||||| || | ||||||||||||| Sbjct 12383 CGAGAGGCCGACGC-TGTCGAGGAACTCGCGAGATCCATTGCCGTCCCAGATCTT 12436 Score = 125 bits (138), Expect = 6e-24 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCCATCTCG 34386 ||||||||||||| | || ||||| || || || |||| ||| || || | || Sbjct 12436 AAGATCTGGGACGGCAATGGATCTCGCGAGTTCCTCGACA-GCGTCGGCCTCTCGCACCG 12378 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||| | ||||| |||||||| ||||| ||| ||||||| || || || || Sbjct 12377 CGAGGAAGGCGACCTTGGCCCCGTCTACGGCTTCCAATGGCGACACTTCGGCGCCGAATA 12318 Query 34447 TCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505 | | || || ||| |||||||| |||| ||||| | ||| |||||| ||||||| | Sbjct 12317 T-GTGGACGCAAAGACGGACTATACGGGGCAGGGCGTGGATCAGCTGGCCGACGTGATTG 12259 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 ||| ||||| || || ||||| | | ||| | ||| ||||||||||||| Sbjct 12258 ACAAGCTGAAGAACAAGCCCTATGACCGTCGCATCATCATGAGCGCGTGGAACCC 12204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256045880480