Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq125 172 1e-37 seq63 156 1e-32 seq22 102 2e-16 seq12 86.0 1e-11 >seq125 Length=94255 Score = 172 bits (190), Expect = 1e-37 Identities = 152/190 (80%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || ||||| || |||||||| ||||||| ||||| | |||||| Sbjct 35859 AGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGGCCATCT 35800 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||||||||| || ||||| || |||| |||||||||||| Sbjct 35799 TCCAACTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 35740 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || || ||||| || ||||| ||| Sbjct 35739 TGGATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCAAGGGTGATGGTC 35680 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 35679 TTGCCGGTGA 35670 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || |||||||| || |||||||| || |||| || || Sbjct 36380 ACGAAGACGCAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGT 36321 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| || || || ||||| || || | || Sbjct 36320 GCGACCGTCCTCAAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATACC 36261 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| |||||||| |||||||| || || ||| |||||||| Sbjct 36260 CTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACCTCGAG 36201 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||||||||| || || | |||||| Sbjct 36200 CGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 36159 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| ||||| ||||| || || | || || | || ||| Sbjct 36598 AGCACCAAGTGCAGAGTCGACTCCTTTTGAATGTTGTAGTCGGACAGCGTACGACCGTCT 36539 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || |||| || ||||| ||| Sbjct 36538 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTATCC 36479 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||| || || ||| |||||||| ||||| ||| Sbjct 36478 TGGATCTTCGACTTCACGTTATCGATGGTATCCGAAGATTCCACCTCGAGCGTGATAGTC 36419 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 36418 TTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 36387 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| |||||| ||| || |||||||| || || | ||||| Sbjct 36152 ACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 36093 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| | ||| || ||||| ||||| | || Sbjct 36092 GCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCC 36033 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || || || |||||||||||||| || |||||||| Sbjct 36032 CTCCTTATCCTGGATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCGACCTCGAG 35973 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| ||||| || || Sbjct 35972 GGTGATGGTCTTGCCAGT 35955 >seq63 Length=225829 Score = 156 bits (172), Expect = 1e-32 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 138089 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138030 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 138029 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 137970 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 137969 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 137911 >seq22 Length=487495 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || |||||||| ||||||| ||| || | ||||| Sbjct 64063 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGACCATCC 64004 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| ||||| || | || || ||||| || |||| || |||||||| Sbjct 64003 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 63945 >seq12 Length=708323 Score = 86.0 bits (94), Expect = 1e-11 Identities = 182/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | |||| ||| || |||||| |||||||| Sbjct 539282 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTACAGCATGAAGGGG 539226 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | |||||| | |||||| | ||| |||| |||||| || || ||| Sbjct 539225 TTGCCAGTCTCGACCTGAGCCTCAAGAATGGCGTACCAGAGCTTCTGGGCACGAACGGTC 539166 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | || || |||||||||| | ||| || ||||||| || || ||| Sbjct 539165 TCACGACCCCGACCCTCCTTCTCGTACTGCTCGTACAGAGCCTCGAACTCGTCGCCGTAG 539106 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || || | ||||| || ||| |||||||| | ||| |||| |||| | | Sbjct 539105 ACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGAGTCCAGGTGCCGTTCTGTTCG 539046 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353 || || ||||||||||| || | | |||| Sbjct 539045 ACACGCTTCATGAAGAGATCGGGGATCCA 539017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159135158245910