Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 131 2e-25 seq95 100 4e-16 >seq12 Length=708323 Score = 131 bits (144), Expect = 2e-25 Identities = 277/413 (67%), Gaps = 8/413 (2%) Strand=Plus/Minus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| || || |||||||||| | |||| || | | | || || ||||| Sbjct 539093 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGGTGCCGTTCTGTTCGACACGCTTCATG 539034 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || ||||| ||||| ||| || || || | | | ||||| ||||| Sbjct 539033 AAGAGATCGGGGATCCACAGAGCGTAAAACAGGTCACGAGCGCGAACCTCTTCCTTTCCG 538974 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| || || || || | | ||| | |||||| || || || || || Sbjct 538973 TGGTTCTTGCGGAGGTCAAGGAAGCTGAAGACATCGGCATGCCACGGCTCGAGGTAAATG 538914 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || || || || || || ||||| || | ||| | ||||||||| || || Sbjct 538913 GCGAATGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGTAC 538854 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| ||||| | ||||| || || || || |||| |||||| || ||| Sbjct 538853 ACACGGAGCATAGGAATGAGGCCGTTGCTGGTACCGTTGGTGCCAGCAATATAGCTGCCA 538794 Query 78255 CTTGCGCGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAG 78310 | ||||||||| |||| || || || || || || |||| || || | Sbjct 538793 GTAGCGCGAATACGG----TGGACATTGAGGCCGATACCACCGGCGGTCTTGGAAATCAT 538738 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 ||||| |||| ||||||||||||||||| || ||||| ||| |||||| Sbjct 538737 GGCGCAGGTCTTCAGGGTATCGTAGATACCCTCAATGCTGTCCTCCTTCATGT 538685 >seq95 Length=147769 Score = 100 bits (110), Expect = 4e-16 Identities = 131/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 |||||||| || |||||||||||||| || ||||| || || ||||| || || | ||| Sbjct 14449 TCGTTAGAGAAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCG 14508 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || |||||| ||||| || || || || |||||||| ||| | || | | | || || Sbjct 14509 AAGGATCCACTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAGGCGCGATGCGAAA 14568 Query 48303 CT-GGCTTC--GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | | ||| || | ||||| || | ||||| || ||||||||||| | |||||| Sbjct 14569 GTCGAGTTCTTGTCGCAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATACAAGG 14627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658953069760