Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08-
31] 1,134 sequences; 47,389,336 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq12 131 2e-25
seq95 100 4e-16
>seq12
Length=708323
Score = 131 bits (144), Expect = 2e-25
Identities = 277/413 (67%), Gaps = 8/413 (2%)
Strand=Plus/Minus
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014
|||||||| || || |||||||||| | |||| || | | | || || |||||
Sbjct 539093 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGGTGCCGTTCTGTTCGACACGCTTCATG 539034
Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074
|||||||| || ||||| ||||| ||| || || || | | | ||||| |||||
Sbjct 539033 AAGAGATCGGGGATCCACAGAGCGTAAAACAGGTCACGAGCGCGAACCTCTTCCTTTCCG 538974
Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134
||||| || || || || | | ||| | |||||| || || || || ||
Sbjct 538973 TGGTTCTTGCGGAGGTCAAGGAAGCTGAAGACATCGGCATGCCACGGCTCGAGGTAAATG 538914
Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194
|| | | || || || || || || ||||| || | ||| | ||||||||| || ||
Sbjct 538913 GCGAATGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGTAC 538854
Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254
|| | | ||| ||||| | ||||| || || || || |||| |||||| || |||
Sbjct 538853 ACACGGAGCATAGGAATGAGGCCGTTGCTGGTACCGTTGGTGCCAGCAATATAGCTGCCA 538794
Query 78255 CTTGCGCGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAG 78310
| ||||||||| |||| || || || || || || |||| || || |
Sbjct 538793 GTAGCGCGAATACGG----TGGACATTGAGGCCGATACCACCGGCGGTCTTGGAAATCAT 538738
Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363
||||| |||| ||||||||||||||||| || ||||| ||| ||||||
Sbjct 538737 GGCGCAGGTCTTCAGGGTATCGTAGATACCCTCAATGCTGTCCTCCTTCATGT 538685
>seq95
Length=147769
Score = 100 bits (110), Expect = 4e-16
Identities = 131/179 (73%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
|||||||| || |||||||||||||| || ||||| || || ||||| || || | |||
Sbjct 14449 TCGTTAGAGAAAGTGAGACCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCG 14508
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
|| |||||| ||||| || || || || |||||||| ||| | || | | | || ||
Sbjct 14509 AAGGATCCACTGAAGAAGATACCCTCGACAGCCGCAAAAGCGATCAGGCGCGATGCGAAA 14568
Query 48303 CT-GGCTTC--GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358
| | ||| || | ||||| || | ||||| || ||||||||||| | ||||||
Sbjct 14569 GTCGAGTTCTTGTCGCAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATACAAGG 14627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694658953069760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |