Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Botrytis_20paeoniae_20[genbank_20GCA_5F001005785.1_202015-05-11]
11,700 sequences; 44,242,179 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq306 123 2e-23
seq477 113 4e-20
seq102 89.7 4e-13
>seq306
Length=72094
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586
||||||||||| | || ||||| ||||| |||||||| ||| | ||||| |||
Sbjct 24600 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 24659
Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
||||| || ||||| ||| |||| | ||||| || ||||| || || ||||||||||||
Sbjct 24660 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 24719
Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706
|| || || || | |||| ||||||| ||| ||||||| ||| | |||
Sbjct 24720 TGGATCTTGGCCTTGACATTGTCGATTGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 24779
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
||||| || || || || || || ||||||||| ||
Sbjct 24780 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGACT 24815
>seq477
Length=47751
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||| | || ||||| | ||||| || ||||||||||||||||||
Sbjct 22498 TACCACCACGAAGTCTGAGAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCGG 22439
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || ||||||||| ||||| || || | || | |||||| ||||||||||
Sbjct 22438 AGAGGGTACGGCCATCCTCGAGTTGTTTACCGGCAAAAATCAAACGCTGTTGATCGGGAG 22379
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||| ||||||||| || || || || | |||| ||| || | |||||
Sbjct 22378 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAAGACTCGA 22319
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||||| ||| | || || || || ||||| || ||
Sbjct 22318 CCTCGAGGGTGATAGTCTTACCAGTAAGAGTCTTGAC 22282
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || || ||||| |||||||| ||| | |||||| ||| ||
Sbjct 22706 ACCAAATGTAAGGTTGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCA 22647
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || ||||| |||| ||||| || ||||| || || || |||||||||||| |
Sbjct 22646 AGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTGTCTTGA 22587
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||||| ||| ||||| | || | || ||
Sbjct 22586 ATCTTGGCCTTCACATTGTCGATAGTGTCCGATGACTCAACCTCCAAAGTGATTGTCTTT 22527
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || ||||| || || || || |||||
Sbjct 22526 CCAGTGAGAGTCTTGACGAAGATTTGCAT 22498
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/115 (77%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || ||||| ||||| ||||||||||| |||| |||||| |||||| |
Sbjct 22193 CAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAATCACTCAAAGTGCGGCCATCCTCAA 22134
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
| || ||||| ||| | || | |||||| || || || || || |||||||| ||
Sbjct 22133 GTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATC 22079
>seq102
Length=67028
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
||||| |||||||| || | ||| || ||||| || || ||||||||| ||||
Sbjct 14445 TTTTGGATGTTGTAGTCTGAGAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 14504
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||| || |||||||| || || |||||||||||| || || ||||| | |||
Sbjct 14505 AAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCG 14564
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| |||||| | | ||||||||| | || | || ||||| || || || || || ||
Sbjct 14565 ATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 14623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433768538496400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |