Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botrytis_20paeoniae_20[genbank_20GCA_5F001005785.1_202015-05-11] 11,700 sequences; 44,242,179 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1291 172 4e-37 seq1911 111 1e-18 seq183 107 2e-17 seq1098 95.1 1e-13 seq477 86.0 5e-11 >seq1291 Length=26091 Score = 172 bits (190), Expect = 4e-37 Identities = 398/593 (67%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| ||||| || || ||| || ||| | | | ||| | | | Sbjct 3113 TATTGGTATCGATTTGGGAACTACCTACTCTTGCGTAGGTATCTTCCGTGATGACAGAAT 3054 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| || ||||| ||| | || ||||| || | ||| ||||||| || Sbjct 3053 CGAAATTATCGCCAACGACCAAGGAAACCGTACCACTCCTTCCTTCGTTGCTTTCACAGA 2994 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | | || ||||| || || | |||| | | || || | ||| || Sbjct 2993 TACCGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAATCAACAC 2934 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | | || |||||||| ||||| ||||| | ||||| | || || ||||| || | Sbjct 2933 TGTCTTCGATGCTAAGCGTTTGATTGGTCGTAAGTTCGCA-GACTCTGAGGTTCAAGCCG 2875 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292 |||||||||| | || ||| | | || | | | ||||| || ||| || | | Sbjct 2874 ATATGAAGCACTTCCCATTCAAGGTCATTGACCGTGCCGGAAAGCCAGTTATCGAGGTTG 2815 Query 550293 C--TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 ||| | ||| || ||||| |||||||| |||| || |||||| | || | Sbjct 2814 AGTTCAAG--GGAGAGAACAAGCAATTCACACCAGAAGAAATCTCTTCTATGATCTTGGT 2757 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATA 550408 || |||| | | || || |||| | || | ||| || | | || || | Sbjct 2756 TAAGATGAGAGAGACTGCTGAGGCTTACCTCGG--AGGAACTGTCAACAACGCTGTCGTC 2699 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| || || | || || ||||||||||| || || || ||||| | ||| Sbjct 2698 ACTGTTCCAGCTTACTTCACCGATTCTCAACGTCAAGCCACCAAGGACGCTGGTCTCATT 2639 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| ||||| ||||| ||||| ||||| |||||||| |||||||| |||| || || Sbjct 2638 GCTGGTCTTAACGTTCTCCGTATCATCAACGAACCTACCGCTGCTGCCATTGCTTACGGT 2579 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | || || | | ||| |||| ||| || |||||||| ||| ||| || Sbjct 2578 TTGGACAAGAAGATTGAGGGTGAACGTAACGTTCTCATCTTCGATCTTGGTGG 2526 Score = 123 bits (136), Expect = 2e-22 Identities = 338/512 (66%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||||| || ||||||| ||| || || ||||| ||||| ||||| ||||| | Sbjct 2008 GATGCCAAGATCGACAAATCCAGAGTCCACGAGATTGTCCTTGTCGGTGGTTCTACCCGT 1949 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAA 552203 || || || | ||| | | | | | ||| ||||| ||||| | ||| | Sbjct 1948 ATCCCACGTATCC---AAAAGCTCATTACCGATTACTTCAACGGTAAGGAGCCAAAC--A 1894 Query 552204 AGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 ||| | || || |||||||||||||| || |||||||| | ||||| || ||||| | Sbjct 1893 AGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCCGCTGTCCAAGCTGCCATTCTCT 1834 Query 552262 CTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||| | || | | || | || || | || | ||| | ||||| | || | | Sbjct 1833 CTGGTGACACTTCCTCCAAGTCCACCAACGAGATCCTCCTTCTCGATGTCGCGCCATTGT 1774 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||| ||| | || || | ||| || ||||| || || || ||||| || || | Sbjct 1773 CTCTCGGTATTGAGACTGCTGGTGGACAAATGACCAAGCTCATTCCAAGAAACACCACCA 1714 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || ||| || || ||||| | || || || ||| ||| ||| | Sbjct 1713 TCCCAACCAAGAAGTCTGAGGTCTTCTCTACCTTCTCTGACAACCAACCTGGTGTCCTCA 1654 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 ||||| | || || || || | || ||| || || || || | | |||| || Sbjct 1653 TTCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAAATTCG 1594 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | ||||| || ||||| || ||||| || || |||||||| || || |||||| Sbjct 1593 AGCTCACTGGTATCCCACCTGCACCACGTGGTGTTCCTCAAATTGAGGTCACATTCGATC 1534 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | |||||||| ||||| |||| || ||||| Sbjct 1533 TTGATGCCAACGGAATCATGAACGTCTCTGCT 1502 >seq1911 Length=53192 Score = 111 bits (122), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAAGTTACGGATG-CAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| | || | | || || ||||| ||||| || || || ||| || Sbjct 26138 GTTGGGCAAGAAGGTCGAGAAGGCCGTCATCACTGTTCCAGCTTACTTCAACGACAACCA 26197 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||||||| || |||||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 26198 ACGTCAAGCTACCAAGGATGCTGGTGCCATTGCTGGTCTTAACGTTCTCCGTATCATCAA 26257 Query 550498 TGAACCTACTGCTGCTGC 550515 || |||||||||||||| Sbjct 26258 CGAGCCTACTGCTGCTGC 26275 >seq183 Length=14837 Score = 107 bits (118), Expect = 2e-17 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 ||||||||||| || |||||||| || || || | ||||||| ||| | ||| Sbjct 5690 ATATGACAAGGTGGCAATGCCATCAACTTGATATCTGCTACATTCCATGCACTCAAAATG 5631 Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTATT--TAATTGATCAA 399686 ||||| | ||| |||||||||| | | || || |||||||| | ||||||||||| Sbjct 5630 ATTCTTCTATCCCATGGATTATTCTTGA--GCTTCCATACAATTTCTGCTAATTGATCAA 5573 Query 399687 TTCCTTGATCATG-ATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATT 399745 ||||| || || ||||||||| | || ||||||||| |||||||||| | | Sbjct 5572 CACCTTG-TCCTGTATAATCTGTCTCGGCATCGATATATTTGGCGCCGAAATGTCGCCAT 5514 Query 399746 TGAAATCCATAACCGGGGCCAATATCTCC 399774 ||||||||||| |||| || | ||||| Sbjct 5513 TGAAATCCATAGACGGGACCCAAGTCTCC 5485 >seq1098 Length=34876 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | ||||| | ||||| ||||| || || || ||| ||| | ||||||||| Sbjct 28231 GTTACCCACGCAGTTGTTACTGTTCCAGCCTACTTCAACGACAACCAAAGACAAGCTACT 28290 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || |||||||| ||||| || | |||||||| |||||| ||||||||||||| || Sbjct 28291 AAGGATGCTGGTATCATTGCCGGCTTGAATGTTCTCCGTATTGTCAATGAACCTACCGCC 28350 Query 550511 GCTGCACTTGCATATGG 550527 || || |||| || || Sbjct 28351 GCAGCTATTGCTTACGG 28367 >seq477 Length=47751 Score = 86.0 bits (94), Expect = 5e-11 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 563272 TGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGT 563331 ||||||||| ||| || ||| |||||||| | || || | ||| || |||||| Sbjct 22472 TGAAGGGTAGATTCCTTTTGAATGTTGTAATCGGAGAGGGTACGGCCATCCTCGAGTTGT 22413 Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || ||||||||||| | | || ||||| |||||||| ||||| || ||||| || || Sbjct 22412 TTACCGGCAAAAATCAAACGCTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTG 22353 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 || || || || ||||| | || | | ||||| || | ||| |||||||| Sbjct 22352 GCCTTGACATTGTCGATGGTATC-GGAAGACTCGACCTCGAGGGTGATAGTCTTACCAGT 22294 Query 563451 AAGAGTTTTAACGA 563464 |||||| || |||| Sbjct 22293 AAGAGTCTTGACGA 22280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028677251233000