Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botrytis_20paeoniae_20[genbank_20GCA_5F001005785.1_202015-05-11] 11,700 sequences; 44,242,179 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq306 120 2e-22 seq477 105 4e-18 seq102 87.8 1e-12 >seq306 Length=72094 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| |||||||| || |||||| ||||||||| ||||| || || || || || || Sbjct 24594 AGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGG 24653 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || || ||||||||||| || || | ||||||| Sbjct 24654 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGGATTCCCTCC 24713 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | |||||||| ||| || || | ||| Sbjct 24714 TTGTCTTGGATC-TTGGCCTTGACATTGTCGATTGTGTCCGAAGACTCAACCTCGAGGGT 24772 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | || || || || ||||||||| Sbjct 24773 GATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 24812 >seq477 Length=47751 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || | || |||||||||||||||||||| ||| Sbjct 22952 CCACCACGAAGACGGAGCACCAAGTGCAATGTCGATTCCTTTTGAATGTTATAATCCGAA 22893 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || | || || || ||||| || || || |||||||| || || Sbjct 22892 AGGGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGGTCGGGTGGG 22833 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCA 34657 | |||||||| ||| |||| || | |||||| || || || ||| || | || | Sbjct 22832 ATACCCTCCTTATCTTGGATC-TTAGCCTTAACGTTATCGATAGTATCTGACGAT-TCTA 22775 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || ||||| || || || || ||||||||||| Sbjct 22774 CTTCTAATGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 22726 Score = 98.7 bits (108), Expect = 6e-16 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || || | ||| || | || | |||||||||| ||||||||| ||||| ||||| | Sbjct 22212 CCACCACGAAGGCGGAGAACAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAATCACTC 22153 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | || |||||||| || ||||| || || |||||||||||||| || | Sbjct 22152 AAAGTG--CGGCCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCAGGTG 22095 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | ||||||||| || |||||| Sbjct 22094 GGATTCCCTCCTTATCCTGGATCTT 22070 Score = 98.7 bits (108), Expect = 6e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||| ||||| || || || || | || || ||||||||||||||||| Sbjct 22460 TCCTTTTGAATGTTGTAATCGGAGAGGGTACGGCCATCCTCGAGTTGTTTACCGGCAAAA 22401 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||||||||| || || || | || ||||||||| |||||| Sbjct 22400 ATCAAACGCTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTT 22354 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | || |||||||| ||||| || || ||| Sbjct 22724 CCACCACGAAGACGAAGGACCAAATGTAAGGTTGATTCCTTTTGGATGTTGTAGTCGGAA 22665 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| ||||| ||||| || | ||| ||||| || || || Sbjct 22664 AGAGTGCGGCCATCTTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 22605 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| ||||| Sbjct 22604 ATACCCTCCTTGTCTTGAATCTT 22582 >seq102 Length=67028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| || ||||| || || || |||| |||||||| || || || || | Sbjct 14443 CCTTTTGGATGTTGTAGTCTGAGAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGA 14502 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| ||||| || || || | ||||||||||||| |||||| Sbjct 14503 TCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTT 14548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314684721526100