Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssochlamys_20fulva_20[genbank_20GCA_5F002242795.1_202017-08-07] 394 sequences; 29,074,643 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq288 143 3e-29 seq330 105 7e-18 seq210 95.1 1e-14 >seq288 Length=302810 Score = 143 bits (158), Expect = 3e-29 Identities = 298/441 (68%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||| ||||| || || || ||||||||||| || || || ||||||| Sbjct 35831 CCCGTACCAATACCATCTGCGCCGTTAATTAGAATCATCGGGACCACGGGCACGTAGACT 35772 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || ||| |||||| | ||| | || | || | || | | Sbjct 35771 TCTGGCTCAATCTTGTCACCATCGTCCTCGTTATACGTCAGGAGCGGCTCATCTGCTGTA 35712 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | || | | | | |||||| ||| ||||| |||| ||||||| ||| || ||| Sbjct 35711 TGAAAGACTCGCCTCGCAAACGGTGATAGCCGAGTATAAATATAACGAGCGCTGGC-GCA 35653 Query 117332 -TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||| ||||| |||||| |||| || | || ||||| |||| | ||| | ||| Sbjct 35652 GTCCGATCCACCCTGAAGACGGCTACCAAAATTGCCGCTCGGTTCCAGGCAGTTAACGTT 35593 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||||| || |||||| | ||||||| ||||||||| |||||| || ||||| Sbjct 35592 GTTGGATCCAACAAAGGTCTGAGCCAGACCGACAATCGTCTGTTGGAGCGAAGCATCACC 35533 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||| || ||||||||| | | | || || || || |||| | | || || || || Sbjct 35532 ATGCTGGTACGCCGTCATCCCAGAAACATAACCAGCAAGCTCAACGACTTTAATATCCTT 35473 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 ||||||| || | | | ||||| |||||| ||||| | || ||||||||||| Sbjct 35472 TCTCAGGTTGCGACGGAAGGATGTATAAAGCACCTTTCGCTGGCCGGGTTTCAGACCATC 35413 Query 117571 CGCCACGTGAGGGATCGAACG 117591 |||| ||| || ||||| Sbjct 35412 AACCACCGAAGGAATAGAACG 35392 >seq330 Length=277972 Score = 105 bits (116), Expect = 7e-18 Identities = 356/549 (65%), Gaps = 18/549 (3%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| || |||| ||| || || || || || || ||| | || || |||||||| Sbjct 169990 TGAGACCTATCACTTGATGTCTCAGAAATATTTCACCCATGCCTCACCGACTCTGTTCAA 170049 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || ||||| || | || ||| |||| | ||||||| ||| Sbjct 170050 TGCCGGCACTCCACAGGCTCAGTTGGCCTCGTGTTTCTTGGTCGATATGAAGGCGGACAG 170109 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || ||||| || || | ||| |||||| || |||||| | ||||| Sbjct 170110 TATTGAAGGTATCTATGATACCTTGAAGACTTGTGCCATGATTTCCAAGACTGCCGGTGG 170169 Query 53422 TATCGGT------ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||| || |||||| |||| | || || | || | || ||||| Sbjct 170170 TATTGGCCTTAACATCCAC----CGAA--TTCGCGCCACTGGTTCCTACATTGCAGGGAC 170223 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || ||| || ||||||| || || |||||||| || ||||||||||| || | || Sbjct 170224 CAATGGCTCTTCCAATGGAATTGTTCCCATGCTCCGAGTATTCAACAACACTGCGAGATA 170283 Query 53536 CGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGC 53594 ||| | || ||||| ||||| | ||| | | || || |||||||||||||| |||| Sbjct 170284 CGTGGATCAAGGTGGCAACAAGCGACCAGGCG-CTTTTGCTATCTACCTCGAGCCTTGGC 170342 Query 53595 ACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCG 53652 ||| || || | || || | || || || || || || | || || | | | Sbjct 170343 ACGATGATGTTTTCGAATTCTTAGATCTCCGGAAAAACCACGGAAAGGAGGAAGTCAGAG 170402 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 || ||||||||||| ||||| |||| ||||||| | |||||| | || |||| Sbjct 170403 CT--CGTGACCTGTTCTTCGCTCTTTGGACTCCGGACTTGTTCATGAAGCGAGTCGAGAC 170460 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGG 53772 ||| || ||| || | ||||| || ||| || || || | ||||||||| Sbjct 170461 CAACGGCGACTGGACGCTTTTCTGCCCCAATGAGGCACCTGGTCTGGCCGATGTCTACGG 170520 Query 53773 TGAGGAGTT 53781 || || || Sbjct 170521 AGATGAATT 170529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 290/440 (66%), Gaps = 17/440 (4%) Strand=Plus/Plus Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 |||| ||||| || ||||| || || || ||||| | ||| ||||||| | Sbjct 171279 TGCTGGTGGCTCCTATGCCTACGGCAAGTACCAGCCAGATACTTGGCTTCAACGAGTGCT 171338 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||||||||| | ||||||||| |||||| ||| || || || ||| | Sbjct 171339 TCGAGCCGTACACTTCGAACATCTACTCTCGCCGGGTCCTTGCTGGCGAATTTCAAGTCG 171398 Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA 55673 ||||| | || |||||||||| | |||| | || | | | | || || Sbjct 171399 TCAACCCGTGGCTTCTCAAGGACCTC--GTCGATCTGGGACTGTGGTCTG-ACAACATGA 171455 Query 55674 CGGAT---ATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCTCTGCGT 55726 | || ||| | || ||| || || ||||| |||||| | | |||||| | Sbjct 171456 AGAATCGCATTATCGCAGAA-GGCGGCTCCGTTCAGAATATTCCTAATATTCCTGCGGAC 171514 Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG---AAGAGTCTGATTGACATG 55783 |||| | | || ||| || ||||||||| | ||| || | ||| | ||| Sbjct 171515 ATCAAAGCCCTCTATAAGACCGTCTGGGAGATTTCTCAGCGAAACATCCTGC---AGATG 171571 Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843 |||||| | ||||| ||||| ||||||||||||||||| ||||| ||| | | Sbjct 171572 GCTGCTGACAGGGGTGCATACATTGACCAGTCCCAGTCTCTTAACATTCATATGAAAGAG 171631 Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 ||| | ||| ||| | | | ||||||||| ||||||||| | |||||| ||||| Sbjct 171632 CCTACTATGGGCAAAATTACCAGCATGCACTTTGCCGGGTGGAAAATGGGACTGAAGACT 171691 Query 55904 GGTATGTACTATCTGCGGAC 55923 || |||||||| || || || Sbjct 171692 GGCATGTACTACCTCCGCAC 171711 >seq210 Length=376446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || ||||| | ||| || ||||| || || |||||||||||||| ||||| Sbjct 39619 ATCAGCTCGTTGGAAAAAGTAAGACCTGGCATCAGACCGCGCTTCTTCAACCAGAAGATA 39560 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | |||||| ||| |||||||| ||||| ||| |||||| ||||| ||||| || Sbjct 39559 GACGCGAAGGATCCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCGACGAGGCGCTGA 39500 Query 74904 GCGAA 74908 ||||| Sbjct 39499 GCGAA 39495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213304961200