Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2228 143 6e-29 seq2340 86.0 1e-11 seq4068 84.2 5e-11 >seq2228 Length=283306 Score = 143 bits (158), Expect = 6e-29 Identities = 183/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| ||||| |||||||| | || ||||| ||| | ||| ||| |||||||| | Sbjct 201662 ATCATCACAGAGGCAGTTGAGATTGAGAAGGAATTCTTAACTGATGCTCTTCCATGTGCC 201721 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 ||| ||||||||||||| | || ||| | || || ||||| || || |||||| | | Sbjct 201722 CTTCTTGGCATGAACGCCAAGCTCATGTGCCAATATATCGAGTTTGTTGCCGACAGACTG 201781 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 ||||||| | || || | || | ||||| | | ||||| |||| |||||||| Sbjct 201782 CTTGTTGCTTTGGGCAACAAAAAGTTCTACAATGCCACCAACCCATTTGACTTTATGGAT 201841 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| ||| | || ||||||||||||||||| ||||| || |||| || |||| | Sbjct 201842 AACATCTCGTTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGATTACCAGAAG 201901 Query 230626 CCTGGTGTGATG 230637 | ||||||||| Sbjct 201902 GCGGGTGTGATG 201913 >seq2340 Length=62631 Score = 86.0 bits (94), Expect = 1e-11 Identities = 170/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 319417 AGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAA 319476 ||||||||||||||| |||||| || | ||||||||| ||| ||||| Sbjct 29288 AGATTTCCCTTGTACGAAACTAGCTTT---TTCTGCTCGTAATGGTATATATCTGTGCAG 29344 Query 319477 ACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTG 319536 || | || || || ||||| ||||| ||||||| || | | ||| | | | Sbjct 29345 ACTTCATCAAGAAAACCGGAATCGTGACTGACAATCAAGCTTGTGATGTCGGTGTGTTGC 29404 Query 319537 ATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCA 319596 | || || || |||||| | ||||| | ||| |||||||| ||||| ||||| Sbjct 29405 TTTAGATACTCCTCTAACCACTTTACGTTGGCAACATCCAGATGGTTAGTCGGTTCGTCG 29464 Query 319597 AGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCAC 319656 || || || | | || |||| || ||| ||||| |||||||| | ||||| ||||| Sbjct 29465 AGGAGAAGGACATCGGCTTTCATGATCATCGCACGCGCAAGAGCCAACTTCATCTTCCAA 29524 Query 319657 CCTCCGGAAAG 319667 || ||||| || Sbjct 29525 CCACCGGAGAG 29535 >seq4068 Length=1467 Score = 84.2 bits (92), Expect = 5e-11 Identities = 174/256 (68%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 292145 GCTCCGATGATATCTTGAGGCACTCCCTCGAAATTAGCCAGCAGTTGCTTCGTATCCTTT 292204 || ||||| | | | || ||||| | | ||| | ||||||||| |||| ||||| Sbjct 924 GCACCGATCAAAGCCTGCGGCACGTCGCGGTAATCGGACAGCAGTTGGCTCGTGTCCTTG 865 Query 292205 GGAAAGCAATAAGCTCCATAACCGAACGAAGGGTT--TG-AGTACCCCTGACCAATGCGA 292261 || | ||| || | || |||||||||| || || || ||||| | || || || Sbjct 864 GGCAGGCAGTAGCCACCGAAACCGAACGAGGGATTGTTGTAGTACGCG---CCGATCCGC 808 Query 292262 GGCTCCAGAGTCACACCATCAATGATTTCTTTCGCATTCATACCGTGAGACATTGCGAAT 292321 || ||||| ||| || || | ||| | ||| | | || | | || || || Sbjct 807 GGGTCCAGGCACACGCCGTCGACGATCTGCCGCGCGTCGAGGCCACGGGCCAGGGCAAAC 748 Query 292322 GTATCTAGTTCGTTGAAGTATGCAACTCGCATTGCAAGATACGTGTTAGAGAATAGTTTG 292381 | || ||||| |||||| | ||||| ||||| || || || ||||| | ||| || ||| Sbjct 747 GAGTCCAGTTCATTGAAGAAGGCAACCCGCATCGCCAGGTAGGTGTTCGCGAACAGCTTG 688 Query 292382 ACGGCCTCGGCTTCGC 292397 | |||||||||||||| Sbjct 687 ATGGCCTCGGCTTCGC 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057758252602130