Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3934 203 4e-47 seq2228 107 2e-18 >seq3934 Length=413549 Score = 203 bits (224), Expect = 4e-47 Identities = 561/854 (66%), Gaps = 12/854 (1%) Strand=Plus/Plus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 ||||| | ||| | ||| || |||| | || || || ||||| || ||||| || || Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA--- 54112 |||||||| | || ||||| | || ||| |||||| ||||| | |||||| Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGG 408906 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 ||||| | ||| | | ||||| || ||||| ||||| | || |||| | | ||| Sbjct 408907 AGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCA 408966 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 ||||||||||| || || || || | |||| ||| || || ||| | || | | ||| Sbjct 408967 GGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 54292 || | || || || || | || || || || | || ||| ||| | || |||||| Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086 Query 54293 TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 54352 | || ||||| || || || || | || || || | ||||| |||| Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146 Query 54353 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 54412 ||||| ||||| || || || ||||| ||| |||| | || ||||||||| | ||| Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 || | | |||||||| || || | || || ||||| || ||||| |||| | | Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGA 409266 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 || | ||||| ||||| ||||| || || || || |||||| || || || Sbjct 409267 GACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCA 409326 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 |||||||| | |||||| || || | ||| ||| |||| || ||| || || || Sbjct 409327 ACACGCATAATCATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATAT 409386 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 54650 || | || |||||||| || || ||||| | || ||||| || || || |||| || Sbjct 409387 GACCTCTCTAAAGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAA 409444 Query 54651 TAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAAATA 54709 | | || || |||| || || || |||| | ||| | ||| | ||||| Sbjct 409445 TGGCCGAATTAAGTTCCTCGGCATGCTTCATAAC-AATTCCGTAGGTTTTTTGAGAAATC 409503 Query 54710 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCA 54769 || || | | || |||||| || || | |||| | | | || | || || | Sbjct 409504 ATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAGTGATAAAGGTCGTCAATGACCGAA 409563 Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 || ||||||| || | |||||||| || || ||||||||||| || || || || Sbjct 409564 GAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGATA 409623 Query 54830 GCATAATCCGGATG 54843 ||||| || || || Sbjct 409624 GCATAGTCTGGGTG 409637 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| |||||||| || || | | ||||| ||||||||||| || || || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | ||||||| ||||||||| || || | |||| | || ||| | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | ||| Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 52988 ATCGTCTTTTGTGGAATTTCCCA 53010 || ||| |||| | |||||||| Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743 >seq2228 Length=283306 Score = 107 bits (118), Expect = 2e-18 Identities = 295/452 (65%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 23828 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 23887 || ||| || ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857 Query 23888 TTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947 | || || || || ||||| || || |||| ||||| |||| |||| |||| Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797 Query 23948 TCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 ||||| || || || ||| || || |||||||| |||||| ||| | | Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || | ||| | ||||||||| |||| | ||||| | ||||| || Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 24127 || ||||| || || | || | | || ||| | || || Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617 Query 24128 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 24187 | | || || || ||| ||| ||||||||||| | ||| ||||| || ||||| Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557 Query 24188 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 24247 ||||| |||||||| |||||||| || || | ||| || || || || || || ||| Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 ||||| || ||||| || || |||||||||| Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAA 201465 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/295 (67%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 || || | |||||||||||| | ||||| || | || || || ||||| || || Sbjct 201279 TCCTTGATATATGTATCAATGAGCAAAGA--GTAGGTCTCGGAGTGGATGTTCTCCATCA 201222 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 || || || |||||||| || | ||||| | |||||| ||||| | ||| || | Sbjct 201221 TGATCTGGAAACCGTAGAAGCAACGGGCCTCTGGAATCTGAACTTCGCCGCTAAAGCGCT 201162 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | |||||| || || || ||||| || ||||| || ||||| ||||| | Sbjct 201161 CAAGAAGATTTTCGTTGACGATGCCGTCGGAAGCGGCAAAGAAGGCCAACACATGAGAGA 201102 Query 24574 TAAAATA---TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 24630 | || || || ||||| | | | | |||||| || | | ||||| || | || Sbjct 201101 TGAAGTAGCGTTCATCGTCATTTAGTCGATCATTCCAGTCGTGAAGGTCTTTGGACAAAT 201042 Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | | ||||| | ||||| || || ||||| ||||| || ||||| | |||||| Sbjct 201041 CGATCTCTTCGGCGGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 200987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593685598206480