Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015-
11-03] 4,851 sequences; 27,454,949 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2228 159 4e-34
seq3060 100 3e-16
seq2521 96.9 4e-15
>seq2228
Length=283306
Score = 159 bits (176), Expect = 4e-34
Identities = 192/258 (74%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| |||||||||||||| |||||||||| ||| ||| | || ||
Sbjct 200987 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACCGCCGAAGAGATCGATTTG 201046
Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||| ||| ||||||| || || | || ||| | || ||| | ||||||
Sbjct 201047 TCCAAAGACCTTCACGACTGGAATGATCGACTAAATGACGATGAACGCTACTTCATCTCT 201106
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811
|| ||| ||||||| || ||||| |||||||||||||||||| ||||| | |||||
Sbjct 201107 CATGTGTTGGCCTTCTTTGCCGCTTCCGACGGCATCGTCAACGAAAATCTTCTTGAGCGC 201166
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || || || ||| | | ||||| || ||||||||||| || |||||| ||
Sbjct 201167 TTTAGC-GGCGAAGTTCAGATTCCAGAGGCCCGTTGCTTCTACGGTTTCCAGATCATGAT 201225
Query 116872 GGAGAACGTGCACTCGGA 116889
||||||| | ||||| ||
Sbjct 201226 GGAGAACATCCACTCCGA 201243
Score = 134 bits (148), Expect = 1e-26
Identities = 306/455 (67%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || ||||| | || |||||| | || || || |||||| | | ||||
Sbjct 201402 AGAAGGCTGATTGGGCCATTCGATGGATCCAAGACAAGGAATCCACCTTCGCCCAACGCC 201461
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| ||||| || ||||| || || ||||||| ||| |||||| | || || |
Sbjct 201462 TGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATTTTCT 201521
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|| | |||||||| ||||| |||||||| || ||||| || || | || ||| | |
Sbjct 201522 GGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCCCGTG 201581
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||||| || |||||||||||| | || ||| || | || || ||
Sbjct 201582 ACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCCCACCTCCGCCATCGCCCCG 201641
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | || ||| || ||| |||| || || || | || ||| || ||| | |
Sbjct 201642 GCCCTTCGGCCGTTGAGGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGAATTCTTAA 201701
Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
| || || || || |||| || || || | || || || | |||| ||||| ||
Sbjct 201702 CTGATGCTCTTCCATGTGC-CCTTCTTGGCATGAA-CGCCAAGCTCATGTGCCAATATAT 201759
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
|||||| || |||||||| ||||| | | ||| | | ||| |||||| | |
Sbjct 201760 CGAGTTTGTTGCCGACAGACTGCTTGTTGCTTTGGGCAACAAAAAGTTCTACAATGCCAC 201819
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||||||| | |||||| ||||
Sbjct 201820 CAACCCATTTGACTTTATGGATAACATCTCGTTGG 201854
>seq3060
Length=205498
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || | || ||||| || || || | || ||||| | |
Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| ||||||| || ||||| || ||||| | |||||
Sbjct 122942 GACACGATCGACAACGTT-AAGACGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 123000
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| |||||||||| || || || ||||| || || | || || ||| ||| || ||
Sbjct 123001 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAA 123060
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| ||| |||||| | || ||| | ||| | ||||||
Sbjct 123061 CATCCAGAAGGAAAGCACTCTGCATTTGGTATTGAGATTGCGCGGCGGC 123109
Score = 93.3 bits (102), Expect = 4e-14
Identities = 142/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || |||||||| || || ||||| |||| || ||| || |||| | | |
Sbjct 122436 TCGTCAAGACTCTCACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCG 122495
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| | || || |||| || || ||||||||||| | || |||||||| |
Sbjct 122496 ATAACG-TGAAAACCAAGATTCAGGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTG 122554
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| |||||||| || || || | ||||| ||| || || |||||||| |||
Sbjct 122555 ATTTTCGCTGGCAAACAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAG 122614
Query 40879 GAGGCCACGCTGCATCTAGT 40898
|| | || || ||||| ||
Sbjct 122615 GAATCTACTCTCCATCTTGT 122634
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | || || ||||| ||||| | || || || | |
Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||| || |||| ||||| ||||| || || | |||||
Sbjct 122714 GACACAATCGACAACG-TCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 122772
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | || ||||||||||| || |||| ||||| || ||||||||
Sbjct 122773 GCAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTACAA 122832
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907
||| ||||| ||| | || |||||||| || | |||||
Sbjct 122833 CATTCAGAAAGAGTCTACACTGCATCTCGTCCTTCGCTT 122871
>seq2521
Length=135005
Score = 96.9 bits (106), Expect = 4e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| || ||||| || | ||||||||||| ||||||| ||| ||||| ||||| ||
Sbjct 57705 GACAAGGAAGGCATTCCTCCTGACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAG 57646
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | || |||||| ||||||||||||||||| ||| |||| || || || ||
Sbjct 57645 GATGGCCGTACCCTCTCGGACTACAACATCCAGAAAGAGTCCACCCTTCACCTCGT 57590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515187958395760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |