Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2228 159 4e-34 seq3060 100 3e-16 seq2521 96.9 4e-15 >seq2228 Length=283306 Score = 159 bits (176), Expect = 4e-34 Identities = 192/258 (74%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||||||||| |||||||||| ||| ||| | || || Sbjct 200987 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACCGCCGAAGAGATCGATTTG 201046 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| ||| ||||||| || || | || ||| | || ||| | |||||| Sbjct 201047 TCCAAAGACCTTCACGACTGGAATGATCGACTAAATGACGATGAACGCTACTTCATCTCT 201106 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 || ||| ||||||| || ||||| |||||||||||||||||| ||||| | ||||| Sbjct 201107 CATGTGTTGGCCTTCTTTGCCGCTTCCGACGGCATCGTCAACGAAAATCTTCTTGAGCGC 201166 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || || || ||| | | ||||| || ||||||||||| || |||||| || Sbjct 201167 TTTAGC-GGCGAAGTTCAGATTCCAGAGGCCCGTTGCTTCTACGGTTTCCAGATCATGAT 201225 Query 116872 GGAGAACGTGCACTCGGA 116889 ||||||| | ||||| || Sbjct 201226 GGAGAACATCCACTCCGA 201243 Score = 134 bits (148), Expect = 1e-26 Identities = 306/455 (67%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| | || |||||| | || || || |||||| | | |||| Sbjct 201402 AGAAGGCTGATTGGGCCATTCGATGGATCCAAGACAAGGAATCCACCTTCGCCCAACGCC 201461 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || ||||| || || ||||||| ||| |||||| | || || | Sbjct 201462 TGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATTTTCT 201521 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | |||||||| ||||| |||||||| || ||||| || || | || ||| | | Sbjct 201522 GGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCCCGTG 201581 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || |||||||||||| | || ||| || | || || || Sbjct 201582 ACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCCCACCTCCGCCATCGCCCCG 201641 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | || ||| || ||| |||| || || || | || ||| || ||| | | Sbjct 201642 GCCCTTCGGCCGTTGAGGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGAATTCTTAA 201701 Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || || || |||| || || || | || || || | |||| ||||| || Sbjct 201702 CTGATGCTCTTCCATGTGC-CCTTCTTGGCATGAA-CGCCAAGCTCATGTGCCAATATAT 201759 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||| || |||||||| ||||| | | ||| | | ||| |||||| | | Sbjct 201760 CGAGTTTGTTGCCGACAGACTGCTTGTTGCTTTGGGCAACAAAAAGTTCTACAATGCCAC 201819 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||||||| | |||||| |||| Sbjct 201820 CAACCCATTTGACTTTATGGATAACATCTCGTTGG 201854 >seq3060 Length=205498 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || || || | || ||||| | | Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| ||||||| || ||||| || ||||| | ||||| Sbjct 122942 GACACGATCGACAACGTT-AAGACGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 123000 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| || || || ||||| || || | || || ||| ||| || || Sbjct 123001 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAA 123060 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| |||||| | || ||| | ||| | |||||| Sbjct 123061 CATCCAGAAGGAAAGCACTCTGCATTTGGTATTGAGATTGCGCGGCGGC 123109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || |||||||| || || ||||| |||| || ||| || |||| | | | Sbjct 122436 TCGTCAAGACTCTCACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCG 122495 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | || || |||| || || ||||||||||| | || |||||||| | Sbjct 122496 ATAACG-TGAAAACCAAGATTCAGGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTG 122554 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| |||||||| || || || | ||||| ||| || || |||||||| ||| Sbjct 122555 ATTTTCGCTGGCAAACAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAG 122614 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || | || || ||||| || Sbjct 122615 GAATCTACTCTCCATCTTGT 122634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || ||||| ||||| | || || || | | Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| || |||| ||||| ||||| || || | ||||| Sbjct 122714 GACACAATCGACAACG-TCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 122772 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || ||||||||||| || |||| ||||| || |||||||| Sbjct 122773 GCAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTACAA 122832 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 ||| ||||| ||| | || |||||||| || | ||||| Sbjct 122833 CATTCAGAAAGAGTCTACACTGCATCTCGTCCTTCGCTT 122871 >seq2521 Length=135005 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || | ||||||||||| ||||||| ||| ||||| ||||| || Sbjct 57705 GACAAGGAAGGCATTCCTCCTGACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAG 57646 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | || |||||| ||||||||||||||||| ||| |||| || || || || Sbjct 57645 GATGGCCGTACCCTCTCGGACTACAACATCCAGAAAGAGTCCACCCTTCACCTCGT 57590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515187958395760